Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2109 95.1 1e-14 seq11380 86.0 6e-12 seq49065 84.2 2e-11 >seq2109 Length=25121 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500 || || | |||||||||||| ||||| | || | |||||| || ||||||| ||| || Sbjct 19611 TCGAAGATGTCCGCATGCCATGGCTCCAAATAGATGGCAAAGGCACCCGGTCGCTTGTTC 19552 Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGG 23550 ||||| |||||||||||||| || ||||| ||||| || | ||||| || Sbjct 19551 CCGCCTTGATCGACGTAACGAGCAGTGTTATTGTAAACCCGGAGCATGGG 19502 >seq11380 Length=6731 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || || |||||| | || || ||| | || Sbjct 3000 ATGCAGATCTTCGTCAAGACACTGACTGGGAAGACCATCACCTTGGAAGTCGAAGCTTCG 2941 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | |||||| || ||| | |||||||||||| | || || || || Sbjct 2940 GATACCATCGAGAATGTCAAAGCAAAGA-TCCAGGACAAGGAAGGGATCCCACCAGATCA 2882 Query 31312 GCAGCGTCTAATATTCGCTGGCAA 31335 ||||||||| ||||| ||||| || Sbjct 2881 GCAGCGTCTTATATTTGCTGGTAA 2858 >seq49065 Length=1973 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| |||||||| || || || || ||||| |||| ||||| | || Sbjct 1842 CATGCAAATCTTCGTGAAGACTCTCACGGGGAAGACAATCACGCTCGAGGTTGAGGCCTC 1783 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||||| || || | || ||||||||| || | || || || || Sbjct 1782 GGACACGATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCA 1723 Query 31312 GCAGCGTCTAATATTCGCTGG 31332 ||||||||| || |||||||| Sbjct 1722 GCAGCGTCTCATCTTCGCTGG 1702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445376460269520