Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq21247 91.5 1e-13 seq11380 91.5 1e-13 seq20539 87.8 2e-12 >seq21247 Length=2906 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||||||| |||| || |||||||||||||| || || || |||||||| ||| |||| Sbjct 2288 TTACCAGCAAAGATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTC-TTGAATTTT 2230 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | |||| | ||| | || || | || |||||||||| ||| | ||| || || || Sbjct 2229 CGCCTTTACATTTTCAATCGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGT 2170 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 2169 AAGTGTTTTCACGAAGATCTGCAT 2146 >seq11380 Length=6731 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||||||| | || || |||||||||||||| || || || |||||||| ||| |||| Sbjct 5768 TTACCAGCAAAAATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTC-TTGAATTTT 5826 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | |||| | ||| | ||| || | || |||||||||| ||| | ||| || || || Sbjct 5827 CGCCTTTACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGT 5886 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 5887 AAGTGTTTTCACGAAGATCTGCAT 5910 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 139624 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG 139683 ||| || |||| || ||||||||||| || || || || |||||||| ||| ||| Sbjct 5069 ACCGGCGAAGATAAGTCGTTGCTGATCTGGTGGAATTCCCTCTTTGTCTTGGATCTTTGC 5128 Query 139684 TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAA 139743 ||| | | ||| | |||||| | | |||||| || | || | |||||| |||||||| Sbjct 5129 TTTGACATTTTCGATTGTGTCTGAAGCCTCCACTTCGAGTGTGATCGTCTTTCCGGTCAA 5188 Query 139744 CGTTTTTACGAATATTTGCAT 139764 ||| || ||||| || ||||| Sbjct 5189 CGTCTTCACGAAAATCTGCAT 5209 >seq20539 Length=3094 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||||||| | ||||| || |||||||| ||||| || ||||||||||| |||||| Sbjct 2456 TTACCAGCAAAAATCAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTG 2515 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||| | | || ||||| | ||| | |||||| || || Sbjct 2516 GCCTTGACATTCTCGATGGTGTCAGACGCTTCGACCTCGAGGGTAATCGTCTTTCCAGTA 2575 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | |||||| ||||| |||||||| Sbjct 2576 AGCGTTTTAACGAAAATTTGCAT 2598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495630061815200