Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2989 147 5e-30 seq20539 116 9e-21 seq11380 113 1e-19 seq21247 109 1e-18 >seq2989 Length=17586 Score = 147 bits (162), Expect = 5e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| ||||||||||| ||||| ||||| || ||||| | |||||| || |||||||| || Sbjct 15758 TGTGGATTCTTTCTGGATATTGTAGTCGGAAAGAGTACGACCGTCCTCGAGTTGTTTGCC 15817 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 || || || |||||||| ||||| | ||| || |||||||| ||||| ||||| || || Sbjct 15818 GGCGAATATAAGCCTCTGCTGATCTGCAGGAATACCTTCTTTGTCCTGGATCTTGGCCTT 15877 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||| || || | ||| || || | | || || || || || ||||| || || || || Sbjct 15878 TACGTTCTCAATGGTGTCCGAAGCTCCGACTTCAAGGGTGATGGTCTTCCCTGTCAGCGT 15937 Query 104542 TTTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 15938 CTTCACGAAGATCTGCATT 15956 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||| || | || || ||||| | || || ||||| || || || || || Sbjct 15954 ATTCCTGCTCGGAGTCGGAGCACAAGATGGAGAGTGGACTCTTTTTGGATGTTGTAATCC 16013 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| |||||||| || |||| ||| || || || | ||| ||||| || Sbjct 16014 GAGAGGGTGCAACCATCTTCTAGCTGCTTTCTAGCGAAGATAAGACGCTGCTGATCTGGT 16073 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||||||||| || || || | |||||| || ||| Sbjct 16074 GGGATCCCTTCCTTGTCCTGGATCTTTGCTTTGACGTTCTCGATGGTATCCGAAGCTTCG 16133 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535 || || | || |||||||| ||||| Sbjct 16134 ACTTCCAAAGTGATAGTCTTTCCAGT 16159 >seq20539 Length=3094 Score = 116 bits (128), Expect = 9e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| || | ||| ||||||||||| ||||||||||| || || || || Sbjct 2456 TTACCAGCAAAAATCAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTG 2515 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || ||||| || | ||| || | ||| ||||| || ||||| ||||| |||||| Sbjct 2516 GCCTTGACATTCTCGATGGTGTCAGACGCTTCGACCTCGAGGGTAATCGTCTTTCCAGTA 2575 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| || || || |||||| || Sbjct 2576 AGCGTTTTAACGAAAATTTGCATTGTG 2602 >seq11380 Length=6731 Score = 113 bits (124), Expect = 1e-19 Identities = 113/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| || | || ||||| || || ||||| ||||| || ||||| || Sbjct 5768 TTACCAGCAAAAATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTTC 5827 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || ||||||||||| | ||||| | ||| ||| ||||| || || || || || ||||| Sbjct 5828 GCCTTTACATTTTCAATTGTATC-CGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGT 5886 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 ||||||||| || || |||||||| Sbjct 5887 AAGTGTTTTCACGAAGATCTGCAT 5910 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || |||||||| |||||||| ||||| || || || ||||| || || ||||||||| Sbjct 2494 TTACCGGCAAAAATGAGCCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATCTTT 2553 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || ||||| || || | ||| || || ||| || ||||| || || ||||| || || Sbjct 2554 GCCTTTACGTTCTCAATGGTGTCCGAAGCTTCGACTTCTAGGGTGATGGTCTTTCCTGTC 2613 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||||||| Sbjct 2614 AGCGTCTTCACGAAGATCTGCATT 2637 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || || | ||| ||||| || || || ||||| || ||||| |||||| Sbjct 2858 TTACCAGCAAATATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGGATCTTT 2917 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| ||||| || | |||||| || ||| || || | || || ||||| ||||| Sbjct 2918 GCTTTGACATTCTCGATGGTATCCGAAGCTTCGACTTCCAAGGTGATGGTCTTCCCAGTC 2977 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 ||||| || || || ||||||||| Sbjct 2978 AGTGTCTTGACGAAGATCTGCATT 3001 >seq21247 Length=2906 Score = 109 bits (120), Expect = 1e-18 Identities = 112/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || || | || ||||| || || ||||| ||||| || ||||| || Sbjct 2288 TTACCAGCAAAGATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTTC 2229 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || ||||||||||| | ||||| | ||| ||| ||||| || || || || || ||||| Sbjct 2228 GCCTTTACATTTTCAATCGTATC-CGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGT 2170 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 ||||||||| || || |||||||| Sbjct 2169 AAGTGTTTTCACGAAGATCTGCAT 2146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150366019853548