Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq20539 127 2e-24 seq21247 102 7e-17 seq11380 98.7 9e-16 seq2989 98.7 9e-16 >seq20539 Length=3094 Score = 127 bits (140), Expect = 2e-24 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||| || | ||| || ||||| || | || || || | |||| || || ||||| Sbjct 177 ACCAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTC--TGATAGCGTGCGACCATCCT 234 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | ||||| |||||| ||||||| ||||| |||||||| ||||| || ||||| ||||| | Sbjct 235 CGAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGGATTCCTTCCTTGTCTT 294 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || ||||| ||| ||| ||||| | ||||| || | |||||| || | Sbjct 295 GGATCTTGGCCTTCACGTTCTCGATTGTGTCTGACGCCTCGACCTCTAACGTGATCGTCT 354 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||||||| || ||||||||||||||||| Sbjct 355 TCCCAGTAAGGGTCTTCACAAAGATCTGCAT 385 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | || |||||||| |||||||| ||||||||||| | ||| || ||||| | Sbjct 857 CAAAGATCAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGAATCTTGGCCTTCA 916 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | ||| ||||| | ||||| || | ||||| ||||| ||||| || || | Sbjct 917 CATTTTCGATTGTGTCTGACGCCTCGACCTCCAGAGTGATCGTTTTCCCAGTGAGGGTCT 976 Query 94992 TCACAAAGATCTGCAT 95007 |||||||||||||||| Sbjct 977 TCACAAAGATCTGCAT 992 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 |||||||| |||||||| ||||||||||| | ||||| |||||||| ||| ||| Sbjct 2477 TGCTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTG 2536 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| ||||| || | || || || ||||||||||| ||||| || || || ||| Sbjct 2537 TCAGACGCTTCGACCTCGAGGGTAATCGTCTTTCCAGTAAGCGTTTTAACGAAAATTTGC 2596 Query 95006 AT 95007 || Sbjct 2597 AT 2598 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||||| || ||||| || ||||| || ||||| ||||| | || || ||||| || Sbjct 557 AAGATTAGTCGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTCGCCTTAACA 616 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | | ||||||| | ||||| |||| |||||| || || ||||| || || || Sbjct 617 TTCTCAATGGTGTCAGAGGCCTCGACCTCAAGCGTGATAGTCTTCCCAGTGAGGGTCTTG 676 Query 94994 ACAAAGATCTGCAT 95007 |||||||||||||| Sbjct 677 ACAAAGATCTGCAT 690 >seq21247 Length=2906 Score = 102 bits (112), Expect = 7e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | || ||||||||| || || || || |||||||| | |||||| ||||| | Sbjct 2281 CAAAGATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTTCGCCTTTA 2222 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | || || | | || || |||| ||||| |||||||||||||| |||| Sbjct 2221 CATTTTCAATCGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGTAAGTGTTT 2162 Query 94992 TCACAAAGATCTGCATGCT 95010 |||| |||||||||||||| Sbjct 2161 TCACGAAGATCTGCATGCT 2143 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| ||||||| | | ||||| ||||| || || || || ||||| | ||||| Sbjct 2643 TTACCGGCAAAGATAAGGCGCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATTTTG 2584 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| ||| ||| ||||| | | ||||| || | |||||||| |||||||| Sbjct 2583 GCCTTCACGTTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTTCCAGTC 2524 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||||||||| Sbjct 2523 AGGGTCTTGACGAAGATCTGCAT 2501 >seq11380 Length=6731 Score = 98.7 bits (108), Expect = 9e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| || | || ||||||||| || || || || |||||||| | |||||| ||||| | Sbjct 5775 CAAAAATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTTCGCCTTTA 5834 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | || || | | || || |||| ||||| |||||||||||||| |||| Sbjct 5835 CATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGTAAGTGTTT 5894 Query 94992 TCACAAAGATCTGCATGCT 95010 |||| |||||||||||||| Sbjct 5895 TCACGAAGATCTGCATGCT 5913 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | | ||||||||||| || || ||||| || || | || || ||||||| Sbjct 4336 CAAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTATCCTGGATCTTAGCCTTGA 4395 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || ||| ||| || | ||||| || | |||||||| |||||||| ||||||| Sbjct 4396 CGTTCTCGATAGTATCTGAAGCCTCGACTTCCAGGGTGATGGTCTTTCCAGTCAGAGTTT 4455 Query 94992 TCACAAAGATCTGCAT 95007 |||| ||||||||||| Sbjct 4456 TCACGAAGATCTGCAT 4471 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| |||| || | || ||||||||||| || || ||||| ||||| | ||| ||| Sbjct 2494 TTACCGGCAAAAATGAGCCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATCTTT 2553 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| ||| | | ||||| | ||||| || | |||||||| ||||| || Sbjct 2554 GCCTTTACGTTCTCAATGGTGTCCGAAGCTTCGACTTCTAGGGTGATGGTCTTTCCTGTC 2613 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| ||||||||||| Sbjct 2614 AGCGTCTTCACGAAGATCTGCAT 2636 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| | ||||| | || ||||| || |||||||||||||| ||||| | || || Sbjct 2127 TTACCGGCGAAGATAAGCCTCTGCTGGTCGGGAGGAATACCTTCCTTGTCCTGGATCTTA 2186 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| ||| ||| || |||| ||||| |||| |||||||| ||||| || Sbjct 2187 GCCTTCACGTTTTCGATGGTATCAGAAGCCTCGACTTCAAGGGTGATGGTCTTTCCGGTC 2246 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 | || ||||| || |||||||| Sbjct 2247 AAGGTCTTCACGAAAATCTGCAT 2269 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| |||| || | | ||||||||||| || || || |||||||| | ||||| ||| Sbjct 3602 CCGGCAAAAATGAGACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCCTGGATTTTAGCC 3661 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 |||||| ||| || || | ||||| || | |||||||| ||||| || || Sbjct 3662 TTGACGTTCTCGATGGTATCCGAAGCCTCGACTTCCAGGGTGATGGTCTTTCCTGTCAGG 3721 Query 94988 GTTTTCACAAAGATCTGCAT 95007 |||||||| ||||| ||||| Sbjct 3722 GTTTTCACGAAGATTTGCAT 3741 >seq2989 Length=17586 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCC 94855 ||||||||| | || ||||| || || | || || ||| | || || || ||| Sbjct 15746 CACCAAGTGGAGTGTGGATTCTTTCTGGATATTGTAGTCGG--AAAGAGTACGACCGTCC 15803 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || || ||||| ||| | || || | || |||||||||| |||||||||||||||||| Sbjct 15804 TCGAGTTGTTTGCCGGCGAATATAAGCCTCTGCTGATCTGCAGGAATACCTTCTTTGTCC 15863 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || ||||| ||| | | ||||| | |||| |||| |||||||| Sbjct 15864 TGGATCTTGGCCTTTACGTTCTCAATGGTGTCCGAAGCTCCGACTTCAAGGGTGATGGTC 15923 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||| ||||||||||| Sbjct 15924 TTCCCTGTCAGCGTCTTCACGAAGATCTGCAT 15955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447899051669160