Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq41851 201 2e-47 seq16030 168 1e-37 seq62981 163 4e-36 seq20341 150 3e-32 seq17441 149 1e-31 seq3391 149 1e-31 seq11687 143 4e-30 seq5825 134 2e-27 seq50548 125 1e-24 seq6714 82.4 1e-11 >seq41851 Length=13287 Score = 201 bits (222), Expect = 2e-47 Identities = 194/249 (78%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || ||||||||||| ||||| ||||| ||||| ||||||||||| || ||||| Sbjct 2759 CTTCGCGACAACATCCAAGGCATCACGAAGCCGGCTATTCGTCGTCTGGCCCGCCGTGGC 2700 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| | ||||| | ||||||| |||| ||| | ||| |||| | ||| Sbjct 2699 GGAGTGAAGCGTATTTCTGGCCTCATCTATGAGGAGACTCGAGGTGTGCTGAAAGTATTC 2640 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||||| | ||||||| || |||| |||||||| ||||| ||||| ||| Sbjct 2639 CTGGAGAACGTTATTCGTGATGCTGTCACCTATTGTGAGCACGCCAAACGCAAGACGGTC 2580 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| |||||||||| |||| || ||||| |||| | | ||||| |||||| Sbjct 2579 ACTGCCATGGACGTCGTCTATGCTCTGAAGCGCCAAGGTCGTACGCTCTATGGATTTGGA 2520 Query 16694 AGTTAATCT 16702 | ||| || Sbjct 2519 GGATAAACT 2511 >seq16030 Length=4730 Score = 168 bits (186), Expect = 1e-37 Identities = 194/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| ||||| || ||||||||||| ||||||||||| || || Sbjct 1483 CGCCAAGCGCCATCGCAAGGTGCTTCGCGACAACATCCAAGGCATCACCAAGCCGGCCAT 1542 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||| ||||||||||| ||||| |||| || | |||| || |||| Sbjct 1543 CCGTCGTCTCGCTCGCCGTGGTGGAGTGAAGCGCATCTCCGGTCTCATCTACGAGGAGAC 1602 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| ||| || || ||| ||| Sbjct 1603 CCGCGGAGTCCTCAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACTGCGA 1662 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| ||||||| || | || || ||||| Sbjct 1663 GCACGCCAAGCGCAAGACCGTCACCGCCATGGATGTCGTCTACGCCCTCAAGCGCCAAGG 1722 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || ||||| || Sbjct 1723 ACGCACCCTGTACGGTTTCGG 1743 >seq62981 Length=1146 Score = 163 bits (180), Expect = 4e-36 Identities = 192/260 (74%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | || || || ||||||||||| || ||||||||||| ||| Sbjct 73 GCCAAGCGCCATCGTAAGGTGCTCCGCGACAACATCCAAGGCATAACCAAGCCAGCCATC 132 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| || ||||| ||||||||||| ||||| |||| || || |||| || |||| Sbjct 133 CGTCGCCTCGCTCGCCGTGGTGGAGTGAAGCGCATCTCCGGCCTGATCTACGAGGAGACC 192 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| ||| ||| |||| ||| || || ||| |||| Sbjct 193 CGTGGAGTTCTCAAGGTGTTCCTTGAGAACGTAATCCGTGACGCCGTCACCTACTGCGAG 252 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| ||||||| || | || || ||||| Sbjct 253 CACGCCAAGCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAAGGA 312 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || ||||| || Sbjct 313 CGCACCCTGTACGGTTTCGG 332 >seq20341 Length=3535 Score = 150 bits (166), Expect = 3e-32 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| || || || |||||||| || ||||||||||| || || Sbjct 1494 CGCCAAGCGCCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCGAT 1435 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| ||||| |||||||| ||||| ||||| |||| || | |||| || |||| Sbjct 1434 CCGTCGCCTGGCCCGTCGTGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 1375 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | |||||| ||| ||| ||| || || || ||| ||| Sbjct 1374 TCGCGGAGTGCTGAAGGTGTTCCTCGAGAACGTGATCAGAGACGCCGTCACCTACTGCGA 1315 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| ||||||| || | || || ||||| Sbjct 1314 GCACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTACGCCCTCAAGCGCCAAGG 1255 Query 16672 CCG 16674 ||| Sbjct 1254 CCG 1252 >seq17441 Length=3994 Score = 149 bits (164), Expect = 1e-31 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | || || || ||||||||||| || ||||||||||| ||| Sbjct 2400 GCCAAGCGCCATCGTAAGGTGCTCCGCGACAACATCCAAGGCATAACCAAGCCAGCCATC 2459 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| || ||||| ||||||||||| |||||| |||| || | |||| || |||| Sbjct 2460 CGTCGCCTCGCTCGCCGTGGTGGAGTGAAGCGTATCTCCGGTCTCATCTACGAGGAGACC 2519 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| | || || ||| ||| |||| ||| || || ||| |||| Sbjct 2520 CGCGGAGTCCTCAAGGTGTTTCTTGAGAACGTGATCCGTGACGCCGTCACCTACTGCGAG 2579 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| ||||||| || | || || ||||| Sbjct 2580 CACGCCAAGCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAAGGA 2639 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || ||||| || Sbjct 2640 CGCACCCTGTACGGTTTCGG 2659 >seq3391 Length=16928 Score = 149 bits (164), Expect = 1e-31 Identities = 193/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| || || || |||||||| || ||||||||||| || ||| Sbjct 12145 GCGAAGCGCCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATC 12204 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| |||||||| || || ||||| |||| || | |||| || |||| Sbjct 12205 CGTCGTCTGGCCCGTCGTGGAGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACC 12264 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | |||||| ||| ||| ||| || || || ||| |||| Sbjct 12265 CGCGGAGTGCTGAAGGTGTTCCTCGAGAACGTGATCAGGGACGCCGTCACCTACTGCGAG 12324 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 12325 CACGCCAAGCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGA 12384 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| ||| | ||| Sbjct 12385 CGCACCCTCTACGGTTTCGGAGGATAA 12411 >seq11687 Length=6551 Score = 143 bits (158), Expect = 4e-30 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| || || || |||||||| || ||||||||||| || ||| Sbjct 2468 GCGAAGCGCCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATC 2527 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| |||||||| || || ||||| |||| || | |||| || |||| Sbjct 2528 CGTCGTCTGGCCCGTCGTGGAGGCGTGAAGCGCATCTCCGGCCTTATCTACGAGGAGACC 2587 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | |||||| ||| ||| ||| || || || ||| |||| Sbjct 2588 CGCGGGGTGCTGAAGGTGTTCCTCGAGAACGTGATCAGGGACGCCGTCACCTACTGCGAG 2647 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 2648 CACGCCAAGCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGA 2707 Query 16673 CG 16674 || Sbjct 2708 CG 2709 >seq5825 Length=11654 Score = 134 bits (148), Expect = 2e-27 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| || || || |||||||| || ||||||||||| || || Sbjct 7686 GCCAAGCGCCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCGATT 7745 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||| |||||||| ||||| ||||| |||| || | |||| || |||| Sbjct 7746 CGTCGTTTGGCCCGTCGTGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACC 7805 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| ||| ||| || || || ||| |||| Sbjct 7806 CGCGGAGTGCTGAAGGTGTTCCTGGAGAACGTCATCAGGGACGCCGTCACCTACTGCGAG 7865 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| ||||||| ||||||| || | || || ||||| Sbjct 7866 CACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAAGGA 7925 Query 16673 CG 16674 || Sbjct 7926 CG 7927 >seq50548 Length=1800 Score = 125 bits (138), Expect = 1e-24 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || ||||| || ||||||||||| || |||||||||||||| |||||||| || Sbjct 2 CGTGACAATATCCAGGGCATCACCAAGCCGGCGATCCGTCGTCTGGCCCGTCGTGGAGGC 61 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||||| |||| || | |||| || |||| || | || ||||| | |||||| Sbjct 62 GTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGAGTGCTGAAGGTGTTCCTC 121 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATAC--CGAGCACGCTAAACGTAAGACTGTCA 16634 ||| ||| ||| || || | |||| ||| ||||||||| || || ||||| || | Sbjct 122 GAGAACGTGATCAGGGACGCGGT-CACT-TACTGCGAGCACGCCAAGCGCAAGACCGTTA 179 Query 16635 CCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| | ||||| || | || || || ||||| Sbjct 180 CCGCCATGGACGTTGTCTACGCCCTCAAGCGCCAGGGCCG 219 >seq6714 Length=10289 Score = 82.4 bits (90), Expect = 1e-11 Identities = 162/237 (68%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 16436 AAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495 |||||||| |||| | ||| || | || ||||||||||| || || || || | Sbjct 6826 AAGCGTCACCGCATGACGGTTCCCGACCATATTCAAGGAATCACGAAACCTGCCATAAGA 6885 Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTG-GTCTATGAAGAGATTCG 16554 |||||||||||||| | ||| || ||||| | || ||| | |||| |||| || Sbjct 6886 CGTCTGGCTCGTCGCGCTGGCGTGAAGCGCATTTC-CGATGGCATCTACATGGAGACCCG 6944 Query 16555 TGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCA 16614 || || | ||| | ||||| ||| || ||||| || || | ||||| || || Sbjct 6945 TGGAGTACTCAAGGTGTTCCTGGAGAGGGTCATCCACGACGCGGTGATGTATACTGAACA 7004 Query 16615 CGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| ||||| ||||| || || ||||| ||||||| || | || ||||| || Sbjct 7005 CGCCAAACGAAAGACCGTGACAGTTATGGACGTCGTCTACGCTGTCAAGCGTCAGGG 7061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79011215881833