Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq20539 87.8 2e-12 seq2989 82.4 7e-11 >seq20539 Length=3094 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| || || | ||||| || ||||||| | || | || | Sbjct 386 AATGCAGATCTTTGTGAAGACCCTTACTGGGAAGACGATCACGTTAGAGGTCGAGGCGTC 327 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| |||||| | || || ||||| ||||| ||||| || ||||||||||| Sbjct 326 AGACACAATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGATCA 267 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 || ||| | || | | ||| || || ||||| |||| | | ||| | | ||||| | Sbjct 266 GCAGAGATTGATCTTTGCCGGAAAGCAGCTCGAGGATGGTCG-CACGCTATCAGACTACA 208 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 | || || || || || ||| |||||||||| || | ||| | |||||||| Sbjct 207 ATATCCAGAAGGAGTCCACTCTCCATCTGGTTCTTCGTCTTCGTGGAGGAAA 156 >seq2989 Length=17586 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || | || || || | |||||| | ||| | | | | Sbjct 15956 AATGCAGATCTTCGTGAAGACGCTGACAGGGAAGACCATCACCCTTGAAGTCGGAGCTTC 15897 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| ||| | || || ||||| ||||||||||| || ||| | ||||| Sbjct 15896 GGACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTGCAGATCA 15837 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || || || | || ||||||||||||||| || | | | | | |||||| || Sbjct 15836 GCAGAGGCTTATATTCGCCGGCAAACAACTCGAGGACGGTCGTACTCTTTCCGACTACAA 15777 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| || |||| |||| || | ||| | ||||| Sbjct 15776 TATCCAGAAAGAATCCACACTCCACTTGGTGCTTCGCCTTCGTGGAGG 15729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478243684082320