Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2109 89.7 1e-12 seq69495 86.0 2e-11 >seq2109 Length=25121 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 ||||| |||||||| || | ||||| |||||||| ||||| ||| || ||| ||||| Sbjct 18756 GAACGTCCGCAGCACTTGCTTATGCGAGTTGCTATCGGTATTCATGGCGAGGACATTGAT 18815 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACA 363567 || |||||||||||||| || | | || | || ||||| || ||| | || ||| Sbjct 18816 GCAGCGATTGAAACATACAATTTGATGAGCGAACGCTACTTCACCCATGCCTCACCCACA 18875 Query 363568 ATGTACAATGCTGGAAC 363584 | | |||||||||||| Sbjct 18876 CTTTTCAATGCTGGAAC 18892 >seq69495 Length=1012 Score = 86.0 bits (94), Expect = 2e-11 Identities = 99/132 (75%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 27235 TACGAAGGCGCAATTGTTATTGATGCAAAATCGGGGTTTTATACGGATCCAGTCGCCACA 27294 ||||| ||||| | |||||| || | |||||||| | || || |||| ||| Sbjct 258 TACGAGGGCGCTACTGTTATAGAACCTCTCCGCGGGTTTTACAATGAACCTATCGCTACA 199 Query 27295 CTTGACTTTGCATCACTATATCCATCAATTATGCTTGCTCACAATTTATGTTACTCAACC 27354 ||||| || || ||||||||||||||||| ||| |||| || ||| | || ||| ||| | Sbjct 198 CTTGATTTCGCGTCACTATATCCATCAATAATGATTGCCCATAATCTTTGCTACACAA-C 140 Query 27355 TTTGTTGAAAAA 27366 ||||||||| || Sbjct 139 TTTGTTGAAGAA 128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302184972025142