Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq7012 87.8 2e-12 seq20539 84.2 2e-11 seq2989 82.4 7e-11 >seq7012 Length=10378 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131041 GACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCG 131100 |||||||| ||||||||||| || || || || ||||| |||||||| || ||| Sbjct 4481 GACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCATCCTCGAGCTGCTTTCCAGCG 4422 Query 131101 TAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC 131160 |||| | ||||||||| || || ||||| || || ||||| ||| || || | Sbjct 4421 AAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTAGCCTGCACA 4362 Query 131161 TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTT 131220 | ||| | || || | || ||| | |||| || | || || || || ||||| || Sbjct 4361 TTCTCGATCGTGTCCGAGGCCTCAACCTCGAGCGTGATTGTCTTCCCCGTGAGAGTCTTC 4302 Query 131221 ACGAAAATCTGCATGACT 131238 ||||| | ||||||||| Sbjct 4301 ACGAAGACTTGCATGACT 4284 >seq20539 Length=3094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | || |||||||| || || ||||| || | Sbjct 159 CCTCCACGAAGACGAAGAACCAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTC--TG 216 Query 131068 ATGGTGCGCGAG--TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || | | |||| ||||| |||||||| || || |||| || | |||||| || |||| Sbjct 217 ATAGCGTGCGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAG 276 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||||||||| ||||| ||| || ||| | | ||| | || || | | ||||| Sbjct 277 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATTGTGTCTGACGCCTCGA 336 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || || || || || || |||||||| Sbjct 337 CCTCTAACGTGATCGTCTTCCCAGTAAGGGTCTTCACAAAGATCTGCAT 385 >seq2989 Length=17586 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||| | ||| | || ||||| ||||| ||||||||||| | ||||| Sbjct 15969 CGGAGCACAAGATGGAGAGTGGACTCTTTTTGGATGTTGTAATCCGAGAGGGTGCAACCA 16028 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || ||||||||||| | ||| |||| | ||||||||| || || ||||| ||||| ||| Sbjct 16029 TCTTCTAGCTGCTTTCTAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTG 16088 Query 131140 TCGGTGATTTTCTGCTT 131156 || ||| || ||||| Sbjct 16089 TCCTGGATCTT-TGCTT 16104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471599900903040