Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2989 118 9e-22 seq20539 98.7 9e-16 seq11380 93.3 4e-14 >seq2989 Length=17586 Score = 118 bits (130), Expect = 9e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGT-GGAGTCGT 25056 |||||| || || || ||||| |||| || || ||||||| | ||||| |||| | | Sbjct 15956 AATGCAGATCTTCGTGAAGACGCTGACAGGGAAGACCATCACCCTTGAAGTCGGAG-CTT 15898 Query 25057 CTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 | ||||| || ||| | ||| || ||| ||||||||||| ||||| | || | Sbjct 15897 CGGACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTGCAGATC 15838 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || |||| || |||||||||||| | || || | ||| ||| | ||| |||| Sbjct 15837 AGCAGAGGCTTATATTCGCCGGCAAACAACTCGAGGACGGTCGTACTCTTTCCGACTACA 15778 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || ||||||||||| || || || ||||| Sbjct 15777 ATATCCAGAAAGAATCCACACTCCACTTGGTGCT 15744 >seq20539 Length=3094 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| | ||||||||| ||||||| | ||||||||| | || Sbjct 1957 AATGCAAATCTTTGTTAAGACGCTCACCGGTAAAACCATCACGCTTGAAGTGGAGGCATC 1898 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| |||||| | ||| || ||| ||||| ||||| || ||||||||||| Sbjct 1897 TGACACAATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCTGACCA 1838 Query 25118 ACAGCGGATTATTTTTGCCGGCAA 25141 || || | || || || || || Sbjct 1837 GCAACGTTTGATCTTCGCAGGTAA 1814 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/144 (75%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | || || ||| | |||||| |||| || ||| | || Sbjct 1585 AATGCAGATTTTTGTCAAGACGCTTACTGGCAAAACTATCACACTCGAGGTAGAGGCTTC 1526 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||||||| | || |||| || ||| ||||| ||||| ||||||||||| Sbjct 1525 CGACACTATCGAG--AATGTTAAAGC-CAAGATCCAAGACAAGGAAGGAATTCCACCTGA 1469 Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138 ||| ||||| | || ||||| || Sbjct 1468 CCAGCAGCGACTGATCTTTGCGGG 1445 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||||||||||| || || || || | || || || | || || |||| || || || Sbjct 2601 ACAATGCAAATTTTCGTTAAAACGCTTACTGGAAAGACGATTACCCTCGAGGTCGAAGCG 2542 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| |||||| | ||| |||||| ||||||||||| ||||| ||||| Sbjct 2541 TCTGACACCATCGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGAATTCCTCCTGAT 2482 Query 25116 CAACAGCGGATTATTTTTGCCGGCAA 25141 || ||||| | |||||||| || || Sbjct 2481 CAGCAGCGCCTGATTTTTGCTGGTAA 2456 >seq11380 Length=6731 Score = 93.3 bits (102), Expect = 4e-14 Identities = 109/145 (75%), Gaps = 8/145 (6%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| |||||||| || | |||||| ||||||||||| | || Sbjct 5210 AATGCAGATTTTCGTGAAGACGTTGACCGGAAAGACGATCACACTCGAAGTGGAGGCTTC 5151 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||| ||||| |||| |||| ||| ||| |||||||| || |||||||| | Sbjct 5150 AGACACAATCGAAAATGTCA---AAGC-AAAGATCCAAGACAAAGAGGGAATTCCACCAG 5095 Query 25114 ACCAACAGCGGATTATTTTTGCCGG 25138 | || || || |||| || ||||| Sbjct 5094 ATCAGCAACGACTTATCTTCGCCGG 5070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| |||| || || | ||||| | || || || | || Sbjct 5546 AATGCAGATCTTCGTCAAGACCCTGACTGGAAAGACAATCACCCTGGAGGTCGAAGCCTC 5487 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| | ||| |||||| ||||| |||||||| ||||| ||||| Sbjct 5486 AGACACCATCGAGAACGTAAAGGCCAAAATCCAGGACAAGGAAGGGATCCCACCAGACCA 5427 Query 25118 ACAGCGGATTATTTTTGCCGGCAA 25141 ||||| ||||||||||||| || Sbjct 5426 GCAGCGCCTTATTTTTGCCGGTAA 5403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432958417392515