Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2989 109 5e-19 seq21247 105 6e-18 seq11380 105 6e-18 seq7012 93.3 4e-14 seq20539 87.8 2e-12 >seq2989 Length=17586 Score = 109 bits (120), Expect = 5e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || ||||| | ||||| ||| | | |||||| | || | ||||| | Sbjct 16159 ACTGGAAAGACTATCACTTTGGAAGTCGAAGCTTCGGATACCATCGAGAACGTCAAAGCA 16100 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||| || || ||||| ||||| || |||||||| || || | || Sbjct 16099 AAGATCCAGGACAAGGAAGGGATCCCACCAGATCAGCAGCGTCTTATCTTCGCTAGAAAG 16040 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| |||| ||| ||||| |||| ||||||||||| |||||||| ||||| Sbjct 16039 CAGCTAGAAGATGGTTGCACCCTCTCGGATTACAACATCCAAAAAGAGTCCAC 15987 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| |||||||| | | | | Sbjct 15955 ATGCAGATCTTCGTGAAGACGCTGACAGGGAAGACCATCACCCTTGAAGTCGGAGCTTCG 15896 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||| || |||||||| | ||||| Sbjct 15895 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTGCAGATCAG 15836 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | |||||||| ||||||||||| | ||||| || || | ||||| ||||| Sbjct 15835 CAGAGGCTTATATTCGCCGGCAAACAACTCGAGGACGGTCGTACTCTTTCCGACTACAAT 15776 Query 22399 ATTCAAAAAGAATCCAC 22415 || || ||||||||||| Sbjct 15775 ATCCAGAAAGAATCCAC 15759 >seq21247 Length=2906 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || || |||||| |||| ||||| |||||| || | Sbjct 2146 ATGCAGATCTTCGTGAAAACACTTACTGGAAAAACGATCACCCTTGAGGTGGAAGCCTCG 2205 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || |||||||||||||| ||||| || ||||||||||| Sbjct 2206 GATACGATTGAAAATGTAAAGGCGAAAATTCAAGACAAAGAGGGAATCCCACCCGATCAG 2265 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 ||||| ||||| ||||| || || Sbjct 2266 CAACGACTTATCTTTGCTGGTAA 2288 >seq11380 Length=6731 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || || |||||| |||| ||||| |||||| || | Sbjct 5910 ATGCAGATCTTCGTGAAAACACTTACTGGAAAAACGATCACCCTTGAGGTGGAAGCCTCG 5851 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || |||||||||||||| ||||| || ||||||||||| Sbjct 5850 GATACAATTGAAAATGTAAAGGCGAAAATTCAAGACAAAGAGGGAATCCCACCCGATCAG 5791 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 ||||| ||||| ||||| || || Sbjct 5790 CAACGACTTATTTTTGCTGGTAA 5768 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| | ||||| ||| | | Sbjct 3000 ATGCAGATCTTCGTCAAGACACTGACTGGGAAGACCATCACCTTGGAAGTCGAAGCTTCG 2941 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || ||||| ||| || || |||||||| || || ||||| ||||| Sbjct 2940 GATACCATCGAGAATGTCAAAGCAAAGATCCAGGACAAGGAAGGGATCCCACCAGATCAG 2881 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 || |||||||||||||| || || Sbjct 2880 CAGCGTCTTATATTTGCTGGTAA 2858 >seq7012 Length=10378 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||| | || || || ||| | || || || || |||| || || || || || | Sbjct 4288 ATGCAAGTCTTCGTGAAGACTCTCACGGGGAAGACAATCACGCTCGAGGTTGAGGCCTCG 4347 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | | || || ||||||||||||||||| ||||| ||||| Sbjct 4348 GACACGATCGAGAATGTGCAGGCTAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAG 4407 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | |||||| ||| || | || || |||||| Sbjct 4408 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACTCTGTCGGACTACAAC 4467 Query 22399 ATTCAAAAAGAATCCA 22414 ||||| || || |||| Sbjct 4468 ATTCAGAAGGAGTCCA 4483 >seq20539 Length=3094 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||| || | ||||||||||| |||| ||||||||||| | | Sbjct 1956 ATGCAAATCTTTGTTAAGACGCTCACCGGTAAAACCATCACGCTTGAAGTGGAGGCATCT 1897 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || || ||||||||||| || || ||||| || || Sbjct 1896 GACACAATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCTGACCAG 1837 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 |||||| | || || || || || Sbjct 1836 CAACGTTTGATCTTCGCAGGTAA 1814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419370016743265