Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq20539 125 2e-23 seq2989 118 2e-21 seq49065 109 1e-18 seq11380 107 5e-18 seq7012 102 2e-16 seq21247 93.3 1e-13 seq556 86.0 1e-11 >seq20539 Length=3094 Score = 125 bits (138), Expect = 2e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | ||| || ||||| | ||| || || |||||||| ||||| | Sbjct 158 TCCTCCACGAAGACGAAGAACCAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGA 217 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 |||||||| || || || | || ||||| || ||||||| | ||| ||| || Sbjct 218 TAGCGTGCGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGG 277 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| || || ||||| || || |||||||| || || | || || || || Sbjct 278 GATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATTGTGTCTGACGCCTCGAC 337 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | ||||||||||||||| || || ||||| || || ||||||||| Sbjct 338 CTCTAACGTGATCGTCTTCCCAGTAAGGGTCTTCACAAAGATCTGCATT 386 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||||||||| || ||||| || ||||||||||| || |||||||| ||||| Sbjct 551 CCTGCGAAGATTAGTCGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTCGCC 610 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || || || | || | || || || |||||||| |||||||| || || Sbjct 611 TTAACATTCTCAATGGTGTCAGAGGCCTCGACCTCAAGCGTGATAGTCTTCCCAGTGAGG 670 Query 288454 GTCTTGACGAATATCTGCATT 288474 |||||||| || ||||||||| Sbjct 671 GTCTTGACAAAGATCTGCATT 691 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 |||||||| || || || || || | ||| |||||||| ||||| |||||||| || Sbjct 1161 CCTGCGAAAATTAGTCGTTGCTGGTCAGGTGGAATTCCTTCCTTATCTTGGATTTTAGCC 1220 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || || || | || | ||| |||||||| ||||||||||| || || || Sbjct 1221 TTGACATTCTCAATGGTGTCAGAAGCTTCGACTTCGAGAGTGATCGTCTTTCCAGTGAGG 1280 Query 288454 GTCTTGACGAATATCTGCATT 288474 || || ||||| ||||||||| Sbjct 1281 GTTTTTACGAAGATCTGCATT 1301 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || ||||| ||||| ||| | || ||||||||||| || |||||||| Sbjct 2456 TTACCAGCAAAAATCAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTG 2515 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || || || || || | || || ||| || ||||| || |||||||| || || Sbjct 2516 GCCTTGACATTCTCGATGGTGTCAGACGCTTCGACCTCGAGGGTAATCGTCTTTCCAGTA 2575 Query 288451 AGAGTCTTGACGAATATCTGCATTATG 288477 || || || ||||| || |||||| || Sbjct 2576 AGCGTTTTAACGAAAATTTGCATTGTG 2602 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || ||||||||||||| ||| || || | |||||||||||| || || ||||| || Sbjct 1814 TTACCTGCGAAGATCAAACGTTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCTTA 1873 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || || || || || | || | || ||||| |||||||| || || ||||| Sbjct 1874 GCCTTGACATTCTCGATTGTGTCAGATGCCTCCACTTCAAGCGTGATGGTTTTACCGGTG 1933 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| || || || |||||| Sbjct 1934 AGCGTCTTAACAAAGATTTGCATT 1957 >seq2989 Length=17586 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 288253 CGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTG 288312 ||||||| || || ||||| | ||| ||||||||||| || || || | ||| ||| Sbjct 15963 CGGAGTCGGAGCACAAGATGGAGAGTGGACTCTTTTTGGATGTTGTAATCCGAGAGGGTG 16022 Query 288313 CGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCT 288372 | || ||||||| || |||| |||||||| |||||||| ||| |||||| ||| Sbjct 16023 CAACCATCTTCTAGCTGCTTTCTAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCCCT 16082 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 || || |||||||| || ||||| ||||| || || | ||| | ||| ||||| | Sbjct 16083 TCCTTGTCCTGGATCTTTGCTTTGACGTTCTCGATGGTATCCGAAGCTTCGACTTCCAAA 16142 Query 288433 GTGATCGTCTTCCCGGTC 288450 ||||| ||||| || ||| Sbjct 16143 GTGATAGTCTTTCCAGTC 16160 >seq49065 Length=1973 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||| |||||||| ||| | ||||||||| || || |||||||| || || Sbjct 1702 CCAGCGAAGATGAGACGCTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCC 1761 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| ||||| || | || | || || ||||||||||| |||||||| || ||| Sbjct 1762 TTCACATTTTCGATCGTGTCCGAGGCCTCAACCTCGAGCGTGATTGTCTTCCCCGTGAGA 1821 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| ||||| || ||||| Sbjct 1822 GTCTTCACGAAGATTTGCAT 1841 >seq11380 Length=6731 Score = 107 bits (118), Expect = 5e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || ||||| |||||||| ||| |||||| ||||| ||||||||||| || Sbjct 4329 TTACCAGCAAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTATCCTGGATCTTA 4388 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || ||||| || |||| ||| | || ||||| || ||||| ||||| || ||| Sbjct 4389 GCCTTGACGTTCTCGATAGTATCTGAAGCCTCGACTTCCAGGGTGATGGTCTTTCCAGTC 4448 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||| || ||||| ||||||||| Sbjct 4449 AGAGTTTTCACGAAGATCTGCATT 4472 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || || |||||||| ||| |||||| ||||| || |||||||| || Sbjct 2858 TTACCAGCAAATATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGGATCTTT 2917 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| || || || || | ||| | ||| ||||| | ||||| |||||||| ||| Sbjct 2918 GCTTTGACATTCTCGATGGTATCCGAAGCTTCGACTTCCAAGGTGATGGTCTTCCCAGTC 2977 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||||||||| ||||||||| Sbjct 2978 AGTGTCTTGACGAAGATCTGCATT 3001 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||| || ||||| ||| |||||| ||||| ||||||||||| || || Sbjct 3966 CCAGCAAAGATAAGGCGCTGCTGATCTGGTGGGATCCCTTCCTTATCCTGGATCTTAGCC 4025 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || ||||| || |||| || | || ||||| || ||||| ||||| |||||||| Sbjct 4026 TTGACGTTCTCAATAGTGTCCGAAGCCTCGACTTCCAGGGTGATGGTCTTTCCGGTCAGG 4085 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| ||||| ||||||||| Sbjct 4086 GTCTTCACGAAGATCTGCATT 4106 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || ||||| |||||||| || | ||||||||| || ||||||||||| || Sbjct 4694 TTACCAGCAAAGATAAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCCTGGATCTTG 4753 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| ||||| || || | |||| | || || || || ||||| ||||| || ||| Sbjct 4754 GCTTTTACGTTCTCAATCGTATCGGAAGCCTCGACCTCCAGAGTGATGGTCTTTCCAGTC 4813 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||| || |||||| Sbjct 4814 AGGGTCTTCACGAAGATTTGCATT 4837 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||| || || || ||| ||| ||||| ||||| || ||||| || ||| Sbjct 5070 CCGGCGAAGATAAGTCGTTGCTGATCTGGTGGAATTCCCTCTTTGTCTTGGATCTTTGCT 5129 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || ||||| || | || | || |||||||| ||||||||||| ||||||| Sbjct 5130 TTGACATTTTCGATTGTGTCTGAAGCCTCCACTTCGAGTGTGATCGTCTTTCCGGTCAAC 5189 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| ||||| ||||||||| Sbjct 5190 GTCTTCACGAAAATCTGCATT 5210 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || || |||||||| ||| ||||||||| ||||| ||||||||||| || Sbjct 3602 CCGGCAAAAATGAGACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCCTGGATTTTAGCC 3661 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || ||||| || || | ||| | || ||||| || ||||| ||||| || ||||| Sbjct 3662 TTGACGTTCTCGATGGTATCCGAAGCCTCGACTTCCAGGGTGATGGTCTTTCCTGTCAGG 3721 Query 288454 GTCTTGACGAATATCTGCATT 288474 || || ||||| || |||||| Sbjct 3722 GTTTTCACGAAGATTTGCATT 3742 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| || | ||| || || || ||||| || |||||||| || Sbjct 2127 TTACCGGCGAAGATAAGCCTCTGCTGGTCGGGAGGAATACCTTCCTTGTCCTGGATCTTA 2186 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || ||||||||||| || | ||| | || ||||| || ||||| ||||| |||||| Sbjct 2187 GCCTTCACGTTTTCGATGGTATCAGAAGCCTCGACTTCAAGGGTGATGGTCTTTCCGGTC 2246 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 | ||||| ||||| ||||||||| Sbjct 2247 AAGGTCTTCACGAAAATCTGCATT 2270 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||| ||||| || ||||||||||| || || ||||| || || | || | ||| Sbjct 5435 TGGGATCCCTTCCTTGTCCTGGATTTTGGCCTTTACGTTCTCGATGGTGTCTGAGGCTTC 5494 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| ||||| || ||||| ||||||||||| ||||||||| Sbjct 5495 GACCTCCAGGGTGATTGTCTTTCCAGTCAGGGTCTTGACGAAGATCTGCATT 5546 >seq7012 Length=10378 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | || || || || || || | || ||||| |||||| Sbjct 4478 TCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCATCCTCGAGCTGCTTTCCAGCGAAG 4419 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| ||| | |||||| || || || || ||||| || || | ||| || Sbjct 4418 ATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTAGCCTGCACATTC 4359 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || || ||||||||||| |||||||| || |||||||| ||| Sbjct 4358 TCGATCGTGTCCGAGGCCTCAACCTCGAGCGTGATTGTCTTCCCCGTGAGAGTCTTCACG 4299 Query 288463 AATATCTGCAT 288473 || | ||||| Sbjct 4298 AAGACTTGCAT 4288 >seq21247 Length=2906 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || ||||| || ||||| || |||||| || || || ||||||||||| Sbjct 2643 TTACCGGCAAAGATAAGGCGCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATTTTG 2584 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || |||||||| || || | || | ||| || || || ||||| ||||| || ||| Sbjct 2583 GCCTTCACGTTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTTCCAGTC 2524 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||||||||| ||||||||| Sbjct 2523 AGGGTCTTGACGAAGATCTGCATT 2500 >seq556 Length=38068 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 269149 ATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATC 269208 ||| | || |||||| |||||| | ||||| || ||||| || || |||| | | Sbjct 5364 ATGGTTGGAATGAATTGTCATCTCAGGTCACAATACATTGAATTTGTAGCAGATCATTTG 5305 Query 269209 TTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTAT--GG 269266 | || || ||||||||||| ||||||| | |||||||| |||| ||| || || Sbjct 5304 CTGGTGGAGCTTGGTTATGAGAAGCTGTACAAGCCCAAGAATCCGTTCGACTTCATGAGG 5245 Query 269267 AACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAAC 269326 ||| ||||| |||| | || ||| || ||||| || ||| ||| ||| || || | Sbjct 5244 AAC--ATTTCAATCGACGTAACGACAAATTTCTTTGAGAAGAAGGTCTCCGAGTACCAGC 5187 Query 269327 GTCCTGGTGT 269336 ||||||| || Sbjct 5186 GTCCTGGAGT 5177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178596684632118