Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq20539 95.1 1e-14 seq2989 93.3 4e-14 seq11380 89.7 5e-13 >seq20539 Length=3094 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| || ||| |||| || |||||||| || ||||||||||||||||| ||||| ||||| Sbjct 2455 CTTACCAGCAAAAATCAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTT 2514 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| ||| ||| | || ||| || || || || | || | ||||| || || Sbjct 2515 GGCCTTGACATTCTCGATGGTGTCAGACGCTTCGACCTCGAGGGTAATCGTCTTTCCAGT 2574 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 | ||||| ||||||||||||||| Sbjct 2575 AAGCGTTTTAACGAAAATTTGCATT 2599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 64311 AAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAA 64370 |||| || || |||||||| || ||||||||||| || ||||| ||||| ||| ||| Sbjct 1168 AAATTAGTCGTTGCTGGTCAGGTGGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACAT 1227 Query 64371 CCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTA 64430 ||| | || ||| || || ||||| | ||| | ||||| || || | ||||||| Sbjct 1228 TCTCAATGGTGTCAGAAGCTTCGACTTCGAGAGTGATCGTCTTTCCAGTGAGGGTTTTTA 1287 Query 64431 CGAAAATTTGCATT 64444 |||| || |||||| Sbjct 1288 CGAAGATCTGCATT 1301 >seq2989 Length=17586 Score = 93.3 bits (102), Expect = 4e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || |||||||| ||||||||||| | || ||||| | ||| Sbjct 15972 AGCACAAGATGGAGAGTGGACTCTTTTTGGATGTTGTAATCCGAGAGGGTGCAACCATCT 16031 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| | || | || || |||||||| || || || || ||||| || || Sbjct 16032 TCTAGCTGCTTTCTAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTGTCC 16091 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | |||||||| || ||| | ||||| || || ||||| | ||| | || Sbjct 16092 TGGA-TCTTTGCTTTGACGTTCTCGATGGTATCCGAAGCTTCGACTTCCAAAGTGATAGT 16150 Query 64411 CTTGCCGGTC 64420 ||| || ||| Sbjct 16151 CTTTCCAGTC 16160 >seq11380 Length=6731 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | || |||| |||||||||||||||||| ||||| || || || || || Sbjct 2127 TTACCGGCGAAGATAAGCCTCTGCTGGTCGGGAGGAATACCTTCCTTGTCCTGGATCTTA 2186 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || || | |||||| || || ||||| | || | |||||| |||||| Sbjct 2187 GCCTTCACGTTTTCGATGGTATCAGAAGCCTCGACTTCAAGGGTGATGGTCTTTCCGGTC 2246 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 || || || |||||||| |||||| Sbjct 2247 AAGGTCTTCACGAAAATCTGCATT 2270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499207729465640