Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq20539 111 1e-19 seq2989 96.9 3e-15 seq11380 82.4 7e-11 seq7012 82.4 7e-11 >seq20539 Length=3094 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||| ||| | || ||||| || || |||||||| || | ||||||| ||| || Sbjct 177 ACCAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGATAGCGTGCGACCATCCTCG 236 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| ||||| || ||||||||| ||||||||||||||| || || |||||||| | Sbjct 237 AGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGGATTCCTTCCTTGTCTTGG 296 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||| | | |||| ||||| | |||||| || | || | ||| || Sbjct 297 ATCTTGGCCTTCACGTTCTCGATTGTGTCTGACGCCTCGACCTCTAACGTGATCGTCTTC 356 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || ||||| |||||||| Sbjct 357 CCAGTAAGGGTCTTCACAAAGATCTGCAT 385 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || ||||| | |||| ||||||||||| ||||| || || || ||||| |||||| Sbjct 2456 TTACCAGCAAAAATCAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTG 2515 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTC-TCGACTTCGACGGTCACCGTTTTGCCGGT 127089 ||||| | |||| |||||| | || | ||||| |||| ||| | ||| || || || Sbjct 2516 GCCTTGACATTCTCGATGGTGTCAG-ACGCTTCGACCTCGAGGGTAATCGTCTTTCCAGT 2574 Query 127090 CAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || ||||| ||||| Sbjct 2575 AAGCGTTTTAACGAAAATTTGCAT 2598 >seq2989 Length=17586 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 126898 TCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGA 126957 ||| | ||| | ||| | || ||||||||||| || |||||||| | |||| | Sbjct 15968 TCGGAGCACAAGATGGAGAGTGGACTCTTTTTGGATGTTGTAATCCGAGAGGGTGCAACC 16027 Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| |||||||| |||| |||| |||| | ||||||||||| || || || || ||||| Sbjct 16028 ATCTTCTAGCTGCTTTCTAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTT 16087 Query 127018 GTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTC 127068 |||| ||| || ||| |||| | |||| ||| |||| | |||||||| Sbjct 16088 GTCCTGGATCTT-TGCTTTGACGTTCTCGATGGTATCCGAAGCTTCGACTTC 16138 >seq11380 Length=6731 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || || ||| |||| | | |||||| |||||||| || || ||||||||| ||| || Sbjct 2127 TTACCGGCGAAGATAAGCCTCTGCTGGTCGGGAGGAATACCTTCCTTGTCCTGGATCTTA 2186 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||| | | ||||| ||| || | | ||||||||| | ||| | || || |||||| Sbjct 2187 GCCTTCACGTTTTCGATGGTATCAGAAGCCTCGACTTCAAGGGTGATGGTCTTTCCGGTC 2246 Query 127091 AGAGTTTTTACAAAAATCTGCAT 127113 | || || || ||||||||||| Sbjct 2247 AAGGTCTTCACGAAAATCTGCAT 2269 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 ||||||||||| || || || ||||| |||||| |||||| ||||| | |||| | Sbjct 3617 CGCTGCTGATCTGGTGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACGTTCTCGATG 3676 Query 127049 GTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 127108 || |||| | ||||||||| | ||| | || || || ||||| ||||| || || || Sbjct 3677 GTATCCGAAGCCTCGACTTCCAGGGTGATGGTCTTTCCTGTCAGGGTTTTCACGAAGATT 3736 Query 127109 TGCAT 127113 ||||| Sbjct 3737 TGCAT 3741 >seq7012 Length=10378 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126920 GACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCG 126979 ||||| || ||||| ||||| || || || || ||| || ||||| ||||||||| Sbjct 4481 GACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCATCCTCGAGCTGCTTTCCAGCG 4422 Query 126980 TAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGT 127039 |||| | ||||||||||| || || || ||||||||||| ||| || || | Sbjct 4421 AAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTAGCCTGCACA 4362 Query 127040 TGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 127099 | |||| ||||||| ||| || |||| || | || || || || ||||| || Sbjct 4361 TTCTCGATCGTGTCCGAGGCCTCAACCTCGAGCGTGATTGTCTTCCCCGTGAGAGTCTTC 4302 Query 127100 ACAAAAATCTGCATGGCT 127117 || || | |||||| || Sbjct 4301 ACGAAGACTTGCATGACT 4284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475084849731440