Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq20539 104 2e-17 seq2109 82.4 7e-11 >seq20539 Length=3094 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 |||||| | || | |||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 1161 CCTGCGAAAATTAGTCGTTGCTGGTCAGGTGGAATTCCTTCCTTATCTTGGATTTTAGCC 1220 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 |||| || | |||||| |||| |||||||||||||| | ||| || || || || Sbjct 1221 TTGACATTCTCAATGGTGTCAGAAGCTTCGACTTCGAGAGTGATCGTCTTTCCAGTGAGG 1280 Query 45321 GTTTTTACAAAAATTTGCAT 45340 |||||||| || || ||||| Sbjct 1281 GTTTTTACGAAGATCTGCAT 1300 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||| ||| ||||| ||||| |||||||||||||| |||||||| || || | | Sbjct 862 ATCAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGAATCTTGGCCTTCACATTT 921 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | ||||| || | |||||| || ||||| | |||||| || || || || || ||| Sbjct 922 TCGATTGTGTCTGACGCCTCGACCTCCAGAGTGATCGTTTTCCCAGTGAGGGTCTTCACA 981 Query 45330 AAAATTTGCAT 45340 || || ||||| Sbjct 982 AAGATCTGCAT 992 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||| || ||||| || || ||||| |||||||| ||||| ||||| |||| Sbjct 2468 ATCAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTGACATTC 2527 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | |||||| || | ||||| ||||| |||| ||| || || || || ||||| || Sbjct 2528 TCGATGGTGTCAGACGCTTCGACCTCGAGGGTAATCGTCTTTCCAGTAAGCGTTTTAACG 2587 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 2588 AAAATTTGCAT 2598 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || |||||| | ||||| ||||||||||| || || || ||||| || ||||| || || Sbjct 1814 TTACCTGCGAAGATCAAACGTTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCTTA 1873 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | ||||| || | ||| ||||| || || | ||||| ||||| Sbjct 1874 GCCTTGACATTCTCGATTGTGTCAGATGCCTCCACTTCAAGCGTGATGGTTTTACCGGTG 1933 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| |||||||| Sbjct 1934 AGCGTCTTAACAAAGATTTGCAT 1956 >seq2109 Length=25121 Score = 82.4 bits (90), Expect = 7e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 124211 CATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCAC 124270 |||||| ||||| |||||||||||||| | || || |||||||| ||||||| | ||| Sbjct 21098 CATGCCAACGGCGTCCACTGCTCAAATTCTTGGCAATAACGAATCGATCGAGCCATACAC 21157 Query 124271 TAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATCATCATTT 124330 || | ||| ||| | ||| | |||| ||||| ||| | | |||| ||||| Sbjct 21158 CTCAAACATATACAGTCGAAGGGTGCTCTCCGGTGATTTCCAAATTGTGAATCCACATTT 21217 Query 124331 GGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATG 124373 | || | || | || | | | ||||||| |||||| ||||| Sbjct 21218 GCTGAAGGATCTTGTCGAGCTGAATTTGTGGGATGAAGACATG 21260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451607804550760