Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq20539 132 1e-25 seq7012 123 6e-23 seq2989 123 6e-23 seq49065 89.7 1e-12 >seq20539 Length=3094 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || |||||||| |||||||| |||| |||||||| | | || Sbjct 165 CGAAGACGAAGAACCAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGATAGCGTG 224 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||||||||| ||||| | | |||||| || ||| |||||| Sbjct 225 CGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGGATTCCT 284 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||||||| |||| ||||||| | || || || ||| Sbjct 285 TCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATTGTGTCTGACGCCTCGACCTCTAAC 344 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || || || |||||||| || || Sbjct 345 GTGATCGTCTTCCCAGTAAGGGTCTTCACAAAGATCTG 382 >seq7012 Length=10378 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 199423 AAGGTGGAGAG-TCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 ||||||||| | | |||||||| || | ||||||||| | || ||| | ||||| || | Sbjct 4495 AAGGTGGAGGGATGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCATCCTCGA 4436 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 |||||||||| |||||||||||||||||||| || || || || || || || | Sbjct 4435 GCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGA 4376 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 |||| || ||| |||| ||||| | | || || || | |||||| ||||| | Sbjct 4375 TCTTAGCCTGCACATTCTCGATCGTGTCCGAGGCCTCAACCTCGAGCGTGATTGTCTTCC 4316 Query 199602 CCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||||| ||||| || | ||| Sbjct 4315 CCGTGAGAGTCTTCACGAAGACTTG 4291 >seq2989 Length=17586 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| || ||||| |||||||| ||||| ||||||| |||||| || | | || Sbjct 15962 TCGGAGTCGGAGCACAAGATGGAGAGTGGACTCTTTTTGGATGTTGTAATCCGAGAGGGT 16021 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| |||||||||| |||||||| ||||||||||| || || || || Sbjct 16022 GCAACCATCTTCTAGCTGCTTTCTAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCCC 16081 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| |||||| || ||| |||| ||| || | | ||| || ||||| Sbjct 16082 TTCCTTGTCCTGGATCTTTGCTTTGACGTTCTCGATGGTATCCGAAGCTTCGACTTCCAA 16141 Query 199588 CGTGATCGTCTTACCCGT 199605 ||||| ||||| || || Sbjct 16142 AGTGATAGTCTTTCCAGT 16159 >seq49065 Length=1973 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || |||||||||||||||||||| || || ||||| || ||||| ||||| | Sbjct 1702 CCAGCGAAGATGAGACGCTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCC 1761 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 ||||| ||||| ||||| | | || || || | |||||| ||||| ||||||||| Sbjct 1762 TTCACATTTTCGATCGTGTCCGAGGCCTCAACCTCGAGCGTGATTGTCTTCCCCGTGAGA 1821 Query 199610 GTTTTCACAAAAATTTG 199626 || ||||| || ||||| Sbjct 1822 GTCTTCACGAAGATTTG 1838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177864541683727