Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq20539 122 1e-22 seq2989 107 2e-18 seq7012 89.7 6e-13 >seq20539 Length=3094 Score = 122 bits (134), Expect = 1e-22 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| || ||||| | | ||| | |||||||| | || |||||| ||||||||||| Sbjct 152 TTAGTTTCCTCCACGAAGACGAAGAACCAGATGGAGAGTGGACTCCTTCTGGATATTGTA 211 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| ||||| ||||| | || ||||||||||| ||||| || ||||| | |||||| || Sbjct 212 GTCTGATAGCGTGCGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATC 271 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 || || | | |||||||| |||||| ||| | || | | ||||| || Sbjct 272 GGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATTGTGTCTGACGC 331 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || || | |||||| || || || || || || || |||||||| |||||| Sbjct 332 CTCGACCTCTAACGTGATCGTCTTCCCAGTAAGGGTCTTCACAAAGATCTGCATT 386 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 46451 TTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTC 46510 || || ||||| ||||| || |||||||| | || | | |||||||| |||||| Sbjct 1814 TTACCTGCGAAGATCAAACGTTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCTTA 1873 Query 46511 TTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTC 46570 ||||| || | | ||||| | ||||| || | |||||||||||| || || Sbjct 1874 GCCTTGACATTCTCGATTGTGTCAGATGCCTCCACTTCAAGCGTGATGGTTTTACCGGTG 1933 Query 46571 AGCGTTTTAACAAAGATTTGCATT 46594 ||||| |||||||||||||||||| Sbjct 1934 AGCGTCTTAACAAAGATTTGCATT 1957 >seq2989 Length=17586 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||||||||||||||| ||||| || |||| ||||| || |||||||||||| Sbjct 15765 TCTTTCTGGATATTGTAGTCGGAAAGAGTACGACCGTCCTCGAGTTGTTTGCCGGCGAAT 15824 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | |||||| || || || | | || |||||| |||||| ||| | || Sbjct 15825 ATAAGCCTCTGCTGATCTGCAGGAATACCTTCTTTGTCCTGGATCTTGGCCTTTACGTTC 15884 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | | | || || | |||||||| || || |||||||| || || Sbjct 15885 TCAATGGTGTCCGAAGCTCCGACTTCAAGGGTGATGGTCTTCCCTGTCAGCGTCTTCACG 15944 Query 46583 AAGATTTGCATT 46594 ||||| |||||| Sbjct 15945 AAGATCTGCATT 15956 >seq7012 Length=10378 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || ||||| || | || ||||||||||| || ||||| Sbjct 4479 CTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCATCCTCGAGCTGCTTTCCAGCGAA 4420 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | ||||||||| |||||| || | | Sbjct 4419 GATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTAGCCTGCACATT 4360 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| | || || || | |||||| || || ||||| || || || || Sbjct 4359 CTCGATCGTGTCCGAGGCCTCAACCTCGAGCGTGATTGTCTTCCCCGTGAGAGTCTTCAC 4300 Query 46582 AAAGATTTGCAT 46593 |||| |||||| Sbjct 4299 GAAGACTTGCAT 4288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564743950644120