Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq6967 114 5e-20 seq20539 105 3e-17 seq11380 89.7 2e-12 seq21247 86.0 2e-11 >seq6967 Length=10669 Score = 114 bits (126), Expect = 5e-20 Identities = 190/273 (70%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 ||||| || || || ||||||||||| ||||| ||||| || || ||||| ||| ||| Sbjct 8118 ACTGTGCCTGCCTACTTCAATGATGCCCAACGTCAAGCCACCAAGGATGCCGGAACCATT 8177 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 ||||| || |||||| | ||||| ||||| || ||||||||||| || | || || || Sbjct 8178 GCTGGATTGAATGTTGTCCGAATCATTAACGAGCCTACAGCAGCCGCCATCGCCTACGGT 8237 Query 451451 CTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGA 451510 || | || || || || ||| || || | || || ||| |||| || || Sbjct 8238 CTTGACAA---GAAGGA---AGGAGAGCGCAACATCCTCGTCTTCGATCTTGGAGGTGGT 8291 Query 451511 ACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAAT 451570 || ||| || | || | ||||| |||| || || ||||| ||| ||||| Sbjct 8292 ACCTTCGATGTCTCCATGCTCACCATTGACAATGGAGTGTTCGAAGTGCTGGCTACCAAC 8351 Query 451571 GGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 || |||||||| | ||||| |||||| | ||| Sbjct 8352 GGAGATACTCACTTGGGAGGAGAAGATTTCGAT 8384 >seq20539 Length=3094 Score = 105 bits (116), Expect = 3e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| ||||| || ||||| || || || ||||| || || ||| | || Sbjct 1301 AATGCAGATCTTCGTAAAAACCCTCACTGGAAAGACGATCACTCTCGAAGTCGAAGCTTC 1242 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | |||||| | | || ||||| |||||||||||||||||||| ||||| || Sbjct 1241 TGACACCATTGAGAATGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCACCTGACCA 1182 Query 391169 ACAACGTTTAATTTTCTCAGG 391189 ||||| |||||||| |||| Sbjct 1181 GCAACGACTAATTTTCGCAGG 1161 Score = 95.1 bits (104), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||||||||| || ||||| || || ||||| || || || ||| | || Sbjct 2599 AATGCAAATTTTCGTTAAAACGCTTACTGGAAAGACGATTACCCTCGAGGTCGAAGCGTC 2540 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | ||| || | | || ||||| ||||| || |||||||||||||||||||| Sbjct 2539 TGACACCATCGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGAATTCCTCCTGATCA 2480 Query 391169 ACAACGTTTAATTTT 391183 || || | ||||| Sbjct 2479 GCAGCGCCTGATTTT 2465 Score = 84.2 bits (92), Expect = 9e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || ||||| || || || |||||||| || || ||||| || || |||| Sbjct 1957 AATGCAAATCTTTGTTAAGACGCTCACCGGTAAAACCATCACGCTTGAAGTGGAGGCATC 1898 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | || || | | || || || ||||| ||||||||||| || ||||| || Sbjct 1897 TGACACAATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCTGACCA 1838 Query 391169 ACAACGTTTAATTTTCTCAGGGAA 391192 |||||||| || ||| |||| || Sbjct 1837 GCAACGTTTGATCTTCGCAGGTAA 1814 Score = 84.2 bits (92), Expect = 9e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || |||||||| || || ||||| || || || || ||||| || || | || Sbjct 2265 AATGCAGATCTTCGTTAAGACCCTCACTGGAAAGACGATCACACTTGAGGTGGAGGCTTC 2206 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | |||||| | | || || || ||||| |||||||||||||| || || || Sbjct 2205 TGACACCATTGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGACCA 2146 Query 391169 ACAACGTTTAATTTTCTCAGG 391189 || || || |||||| |||| Sbjct 2145 GCAGCGATTGATTTTCGCAGG 2125 >seq11380 Length=6731 Score = 89.7 bits (98), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| |||||||| ||||| ||||| || || ||||| || ||| | || Sbjct 5910 ATGCAGATCTTCGTGAAAACACTTACTGGAAAAACGATCACCCTTGAGGTGGAAGCCTCG 5851 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | || ||||||||||| || || ||||| || || ||||| Sbjct 5850 GATACAATTGAAAATGTAAAGGCGAAAATTCAAGACAAAGAGGGAATCCCACCCGATCAG 5791 Query 391170 CAACGTTTAATTTT 391183 ||||| | ||||| Sbjct 5790 CAACGACTTATTTT 5777 >seq21247 Length=2906 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| |||||||| ||||| ||||| || || ||||| || ||| | || Sbjct 2146 ATGCAGATCTTCGTGAAAACACTTACTGGAAAAACGATCACCCTTGAGGTGGAAGCCTCG 2205 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | || ||||||||||| || || ||||| || || ||||| Sbjct 2206 GATACGATTGAAAATGTAAAGGCGAAAATTCAAGACAAAGAGGGAATCCCACCCGATCAG 2265 Query 391170 CAACG 391174 ||||| Sbjct 2266 CAACG 2270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1973946908523948