Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq41513 250 3e-61 seq6967 181 1e-40 seq39560 154 2e-32 >seq41513 Length=9673 Score = 250 bits (276), Expect = 3e-61 Identities = 536/792 (68%), Gaps = 12/792 (2%) Strand=Plus/Plus Query 6953 CCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCA 7012 ||||| || ||||||| ||| || | || | || ||||| || | || | ||| Sbjct 1796 CCAAGTGAGAGAGGTGCCACATCGAGAAGCAGAAGATCTTGCACTGCCTCAGACTTGTCA 1855 Query 7013 CCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATC 7072 || | | ||| || || ||||| | || || || || || |||||||| ||||| || Sbjct 1856 CCGGAGAGGATAGCAGCCTGGACAGCGGCACCATAGGCAACGGCCTCATCAGGGTTGATG 1915 Query 7073 GTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATT 7132 | || ||||||||||| || || ||| || | | | || | |||||||| Sbjct 1916 GACTTGTTCAGTTCTTTTCCAGAGAAGAGATCAGAAAGGAGCTTCTGGACCTTCGGGATA 1975 Query 7133 CGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGAT-TTATCGATCTTTGAGTC 7191 || || || || ||||||| |||||| || | | ||| | | || || ||||| | ||| Sbjct 1976 CGGGTGGAACCTCCGACCAGAACGATGTCGTGGA-TTTGGCTCTTGTCCATCTTGGCGTC 2034 Query 7192 TCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTC 7251 | || | ||| || || || ||||| ||||||||| ||| || |||||||| Sbjct 2035 CCTCAGGGATTTCTCAACGGGGTCCATGGTGGAACGGAACAAATCCGCGCAGAGTTCCTC 2094 Query 7252 AAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTC 7311 ||| || || || || ||| || ||||| || | || || | || || || ||||| Sbjct 2095 AAAGCGGGCTCGAGTGATGTTAGTGTAGAAGTCGATACCCTCAAACAATGAGTCGATTTC 2154 Query 7312 AATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAA 7371 |||| | || | | ||||| | || ||||| || || || || || || || | Sbjct 2155 GATGGAAGCCTGAGATGAGGAAGAGAGGGTACGCTTGGCACGTTCGCAAGCTGTGCGGAG 2214 Query 7372 ACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTC 7431 |||||| || ||||| |||||| | | ||| ||||| || || || || |||||| | Sbjct 2215 ACGACGCAGAGCACGAGGGTTAGTGTTGAGATCCTTCTTGTGCTTGCGCTTGAACTCTGC 2274 Query 7432 AGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGC 7491 |||||| | | || ||||| ||||| || || | ||| || || || || Sbjct 2275 GACGAAGTGGTTGACCATTCGGTTGTCGAAGTCTTCTCCTCCAAGGTGAGTGTCACCAGC 2334 Query 7492 GGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACC 7551 || | ||| ||||| ||||| || | || ||| | | | || ||||| || ||||| Sbjct 2335 AGTGGATTTCACTTCGAAGATTCCATCCTCGATGGTCAGGATGGACACATCGAAGGTACC 2394 Query 7552 ACCACCCAGGTCAAAAATGAGTACG-TTCG-TATC--GTCGTCTTTGTTCTTATCGAGAC 7607 ||| || || || || ||||| ||| |||| | || || |||| || ||||||| Sbjct 2395 ACCTCCAAGATCGAAGATGAGCACGTTTCGCTCTCCGGTACCCTTT----TTGTCGAGAC 2450 Query 7608 CGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGCA 7666 |||| |||||||| || || || || || || ||||| ||||| ||| |||| || | Sbjct 2451 CGTAGGCGATAGCGGCAGCAGTGGGCTCGTTGATAATTCGAAGTACA-TTCATTCCTGAG 2509 Query 7667 ATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTT 7726 || | | | ||||| || || || || || || || ||||| ||||| || || || || Sbjct 2510 ATTGCTCCTGCATCCTTAGTGGCCTGACGCTGTGAGTCGTTGAAGTATGCAGGTACTGTG 2569 Query 7727 ACGACCGCGTCC 7738 | ||| |||||| Sbjct 2570 ATGACAGCGTCC 2581 >seq6967 Length=10669 Score = 181 bits (200), Expect = 1e-40 Identities = 272/384 (71%), Gaps = 3/384 (1%) Strand=Plus/Minus Query 7447 GAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTC 7506 || |||| |||||||||||| || |||||||| ||||| || ||| || ||||| Sbjct 8393 GACTCTCTGATCGAAATCTTCTCCTCCCAAGTGAGTATCTCCGTTGGTAGCCAGCACTTC 8334 Query 7507 AAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAA 7566 || | || |||||| | | || || ||||| || |||||||| || || || || Sbjct 8333 GAACACTCCATTGTCAATGGTGAGCATGGAGACATCGAAGGTACCACCTCCAAGATCGAA 8274 Query 7567 AATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGC 7626 | ||| | ||| || || ||| ||||| || |||||||| ||||| || || || Sbjct 8273 GACGAGGATGTTGCGCTC-TC--CTTCCTTCTTGTCAAGACCGTAGGCGATGGCGGCTGC 8217 Query 7627 CGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGT 7686 || || || ||||| || || | | |||| |||||||| ||| | ||||| || || Sbjct 8216 TGTAGGCTCGTTAATGATTCGGACAACATTCAATCCAGCAATGGTTCCGGCATCCTTGGT 8157 Query 7687 CGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTT 7746 ||||| ||||| | ||| || |||||||| || || || ||||| |||| | |||| Sbjct 8156 GGCTTGACGTTGGGCATCATTGAAGTAGGCAGGCACAGTGACGACAGCGTGTTTCACTTC 8097 Query 7747 CTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTC 7806 ||| ||||| || || || ||||| || ||||| || |||||||| | || || || Sbjct 8096 CTTTCCGAGGTAAGACTCGGCGATCTCCTTCATCTTTCCGAGAACCATGGCAGAGATTTC 8037 Query 7807 TTCAGCCGCAAACTGTTTCGTTTC 7830 ||| | | ||||| ||||| || Sbjct 8036 TTCGGGAGTGAACTGCTTCGTATC 8013 >seq39560 Length=1040 Score = 154 bits (170), Expect = 2e-32 Identities = 178/237 (75%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACA 7653 ||||| ||||| || || ||||| || || || ||||| || || || || || | ||| Sbjct 500 TTCTTGTCGAGGCCATAGGCGATTGCGGCTGCAGTTGGCTCGTTGATTATCCGGACGAC- 558 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 ||||| ||||| || || | ||||| || |||||||| || || | |||||| ||||| Sbjct 559 GTTCAATCCAGCGATCGTACCAGCATCCTTGGTCGCTTGACGCTGTGCATCGTTGAAGTA 618 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 |||||| || || ||||| |||| | | || | || || || || || || ||||| || Sbjct 619 GGCCGGAACAGTGACGACTGCGTTCTTCACCTCTTTGCCAAGGTATGACTCGGCGATCTC 678 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTC 7830 ||||| ||||| |||||||| | || ||||| |||| || ||||||||||| || Sbjct 679 CTTCATCTTGGTCAGAACCATGGCGGAGATCTCCTCAGGAGCGAACTGTTTCGTCTC 735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634577209644040