Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2989 163 6e-35 seq20539 132 1e-25 seq11380 125 2e-23 seq7012 123 6e-23 seq21247 116 8e-21 >seq2989 Length=17586 Score = 163 bits (180), Expect = 6e-35 Identities = 159/205 (78%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| ||||| || |||||||| |||| |||||| | || || ||||| || Sbjct 15752 GTGGAGTGTGGATTCTTTCTGGATATTGTAGTCGGAAAGAGTACGACCGTCCTCGAGTTG 15811 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||| ||||| | || || |||| |||||| ||||||||||| || || || Sbjct 15812 TTTGCCGGCGAATATAAGCCTCTGCTGATCTGCAGGAATACCTTCTTTGTCCTGGATCTT 15871 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||||||||||||||||||| | | ||||||||||| | ||||| ||||| Sbjct 15872 GGCCTTTACGTTCTCAATGGTGTCCGAAGCTCCGACTTCAAGGGTGATGGTCTTCCCTGT 15931 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || || || ||||| | |||||| Sbjct 15932 CAGCGTCTTCACGAAGATCTGCATT 15956 Score = 152 bits (168), Expect = 1e-31 Identities = 153/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||||| | ||||| || ||||||||||||||||| || |||||||| | || || Sbjct 15962 TCGGAGTCGGAGCACAAGATGGAGAGTGGACTCTTTTTGGATGTTGTAATCCGAGAGGGT 16021 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| | ||||||||||| || || || ||||| || || || Sbjct 16022 GCAACCATCTTCTAGCTGCTTTCTAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCCC 16081 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| || || ||| ||||||||||| ||||| |||||| ||| ||||| | Sbjct 16082 TTCCTTGTCCTGGATCTTTGCTTTGACGTTCTCGATGGTATCCGAAGCTTCGACTTCCAA 16141 Query 195099 GGTAACCGTCTTTCCTGTC 195117 || | |||||||| ||| Sbjct 16142 AGTGATAGTCTTTCCAGTC 16160 >seq20539 Length=3094 Score = 132 bits (146), Expect = 1e-25 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||||||||| || |||||||| ||||| || ||||| ||||| || ||||| ||||| Sbjct 1159 TACCTGCGAAAATTAGTCGTTGCTGGTCAGGTGGAATTCCTTCCTTATCTTGGATTTTAG 1218 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 |||||| |||||||||||||| ||| ||| ||||| || || | ||||||||| || | Sbjct 1219 CCTTGACATTCTCAATGGTGTCAGAAGCTTCGACTTCGAGAGTGATCGTCTTTCCAGTGA 1278 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 ||||||||||| | |||||| Sbjct 1279 GGGTTTTTACGAAGATCTGCATT 1301 Score = 122 bits (134), Expect = 2e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || || || || || || || || |||||||| |||||||||||||| ||||| Sbjct 2455 CTTACCAGCAAAAATCAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTT 2514 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| ||||| |||||||| || ||| || || ||||||| ||||||||| || Sbjct 2515 GGCCTTGACATTCTCGATGGTGTCAGACGCTTCGACCTCGAGGGTAATCGTCTTTCCAGT 2574 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||||| ||||| | ||||||| Sbjct 2575 AAGCGTTTTAACGAAAATTTGCATT 2599 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||||||||| || | ||| || |||||||| ||||| ||||| |||||||| || || Sbjct 2123 TACCTGCGAAAATCAATCGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAG 2182 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 |||||| |||||||||||||| ||| ||||| ||||| || | ||||||||| || | Sbjct 2183 CCTTGACATTCTCAATGGTGTCAGAAGCCTCCACCTCAAGTGTGATCGTCTTTCCAGTGA 2242 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 || || ||||| | |||||| Sbjct 2243 GGGTCTTAACGAAGATCTGCATT 2265 Score = 114 bits (126), Expect = 3e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || || ||||||||||| || || |||||||| || | || || | ||||| || Sbjct 176 AACCAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGATAGCGTGCGACCATCCTC 235 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || || ||||| | || || || || ||||| || ||||| |||||||| Sbjct 236 GAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGGATTCCTTCCTTGTCTTG 295 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| |||||||| || ||||| || || || || | || | |||||| Sbjct 296 GATCTTGGCCTTCACGTTCTCGATTGTGTCTGACGCCTCGACCTCTAACGTGATCGTCTT 355 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | || || || || | |||||| Sbjct 356 CCCAGTAAGGGTCTTCACAAAGATCTGCATT 386 Score = 93.3 bits (102), Expect = 9e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 |||||||||||||| | ||||| ||||| || || || ||||| |||||||| || || Sbjct 1814 TTACCTGCGAAGATCAAACGTTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCTTA 1873 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| ||||| || ||||| || ||||||||||| || | || || || || Sbjct 1874 GCCTTGACATTCTCGATTGTGTCAGATGCCTCCACTTCAAGCGTGATGGTTTTACCGGTG 1933 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | || || || || | ||||||| Sbjct 1934 AGCGTCTTAACAAAGATTTGCATT 1957 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||||||||| ||||| || ||||| ||||| || ||||| ||||| || || || Sbjct 549 TACCTGCGAAGATTAGTCGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTCG 608 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||| || |||||||||||||| || || || ||||| || | ||||| || || | Sbjct 609 CCTTAACATTCTCAATGGTGTCAGAGGCCTCGACCTCAAGCGTGATAGTCTTCCCAGTGA 668 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 || || || || | |||||| Sbjct 669 GGGTCTTGACAAAGATCTGCATT 691 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| ||||| || || || |||||||||||||||||||||||||| || Sbjct 849 CTTACCAGCAAAGATCAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGAATCTT 908 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || || || ||||| || || || || || || | ||| || || || Sbjct 909 GGCCTTCACATTTTCGATTGTGTCTGACGCCTCGACCTCCAGAGTGATCGTTTTCCCAGT 968 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | || || || || | |||||| Sbjct 969 GAGGGTCTTCACAAAGATCTGCATT 993 >seq11380 Length=6731 Score = 125 bits (138), Expect = 2e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || || || || | || || ||||| || |||||||| ||||||||||| ||| Sbjct 2494 TTACCGGCAAAAATGAGCCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATCTTT 2553 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||||||||||||||||||| ||| ||||| ||||| | |||||||||||| Sbjct 2554 GCCTTTACGTTCTCAATGGTGTCCGAAGCTTCGACTTCTAGGGTGATGGTCTTTCCTGTC 2613 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | || || ||||| | |||||| Sbjct 2614 AGCGTCTTCACGAAGATCTGCATT 2637 Score = 122 bits (134), Expect = 2e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||| ||||||||||||||||| || ||||| ||||| || ||||||||||| || ||| Sbjct 5069 ACCGGCGAAGATAAGTCGTTGCTGATCTGGTGGAATTCCCTCTTTGTCTTGGATCTTTGC 5128 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 ||||| || || || ||||| ||| |||||||| || || | ||||||||| ||||| Sbjct 5129 TTTGACATTTTCGATTGTGTCTGAAGCCTCCACTTCGAGTGTGATCGTCTTTCCGGTCAA 5188 Query 195120 AGTTTTTACGAACACTTGCATT 195141 || || ||||| | |||||| Sbjct 5189 CGTCTTCACGAAAATCTGCATT 5210 Score = 113 bits (124), Expect = 1e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| || || || || || || || ||||| || || || |||||||| || ||||| Sbjct 3598 CTCACCGGCAAAAATGAGACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCCTGGATTTT 3657 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| ||||| |||||| || ||||| ||||| | ||||||||||| Sbjct 3658 AGCCTTGACGTTCTCGATGGTATCCGAAGCCTCGACTTCCAGGGTGATGGTCTTTCCTGT 3717 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || ||||| ||||| | ||||||| Sbjct 3718 CAGGGTTTTCACGAAGATTTGCATT 3742 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| ||||||||||| | || ||||| |||||||| ||||| ||||| || || || Sbjct 2127 TTACCGGCGAAGATAAGCCTCTGCTGGTCGGGAGGAATACCTTCCTTGTCCTGGATCTTA 2186 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||| || ||||| || ||| || ||||||||||| | |||||||| ||| Sbjct 2187 GCCTTCACGTTTTCGATGGTATCAGAAGCCTCGACTTCAAGGGTGATGGTCTTTCCGGTC 2246 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 || || || ||||| | |||||| Sbjct 2247 AAGGTCTTCACGAAAATCTGCATT 2270 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || || ||||||||||| || || || || || || ||||||||||||||||| Sbjct 5767 CTTACCAGCAAAAATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTT 5826 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || ||||| || ||||| |||||| |||||||| | ||| ||||| || Sbjct 5827 CGCCTTTACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGT 5886 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | ||||| Sbjct 5887 AAGTGTTTTCACGAAGATCTGCAT 5910 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || |||||||| || || || ||||| || || ||||| || || || || || Sbjct 3964 TACCAGCAAAGATAAGGCGCTGCTGATCTGGTGGGATCCCTTCCTTATCCTGGATCTTAG 4023 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||||||||||||||| ||||||||| || ||||| ||||| | |||||||| |||| Sbjct 4024 CCTTGACGTTCTCAATAGTGTCCGAAGCCTCGACTTCCAGGGTGATGGTCTTTCCGGTCA 4083 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 || || ||||| | |||||| Sbjct 4084 GGGTCTTCACGAAGATCTGCATT 4106 Score = 104 bits (114), Expect = 5e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || |||||||| || || || ||||| || || ||||| || || || || || Sbjct 4328 CTTACCAGCAAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTATCCTGGATCTT 4387 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| || || || ||| || ||||| ||||| | |||||||| || Sbjct 4388 AGCCTTGACGTTCTCGATAGTATCTGAAGCCTCGACTTCCAGGGTGATGGTCTTTCCAGT 4447 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || |||||| ||||| | |||||| Sbjct 4448 CAGAGTTTTCACGAAGATCTGCATT 4472 >seq7012 Length=10378 Score = 123 bits (136), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 194934 AAGGTGAAGAG-TGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 |||||| || | ||||||| || ||||| ||||| || | ||||| | ||||| |||| Sbjct 4495 AAGGTGGAGGGATGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCATCCTCGA 4436 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052 ||||||| || |||||||| || || || || || || || || || || |||||||| | Sbjct 4435 GCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGA 4376 Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112 | || || || ||||| || |||||||| || || || || || | ||||| | Sbjct 4375 TCTTAGCCTGCACATTCTCGATCGTGTCCGAGGCCTCAACCTCGAGCGTGATTGTCTTCC 4316 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || | ||| || ||||| |||||||| Sbjct 4315 CCGTGAGAGTCTTCACGAAGACTTGCAT 4288 >seq21247 Length=2906 Score = 116 bits (128), Expect = 8e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || |||||||||||||| || || || || || || ||||||||||||||||| Sbjct 2289 CTTACCAGCAAAGATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTT 2230 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || ||||| || ||||| |||||| |||||||| | ||| ||||| || Sbjct 2229 CGCCTTTACATTTTCAATCGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGT 2170 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | ||||| Sbjct 2169 AAGTGTTTTCACGAAGATCTGCAT 2146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108486803779427