Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq20539 100 2e-15 seq11380 100 2e-15 seq41513 93.3 3e-13 seq43046 91.5 1e-12 seq21247 91.5 1e-12 >seq20539 Length=3094 Score = 100 bits (110), Expect = 2e-15 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || |||||||| || | |||||||||||||||||||||||||| ||||| ||||| Sbjct 2456 TTACCAGCAAAAATCAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTG 2515 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 || || ||| || || |||| | || ||||| |||| || || ||||| Sbjct 2516 GCCTTGACATTCTCGATGGTGTCAGACGCTTCGAC-CTCGAGGGTAATCGTCTTTCCAGT 2574 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 ||| |||||||||||||||||||| Sbjct 2575 AAGCGTTTTAACGAAAATTTGCAT 2598 Score = 86.0 bits (94), Expect = 5e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || || ||||| |||| |||||| ||||| ||||||||||| |||||||| ||||| Sbjct 1161 CCTGCGAAAATTAGTCGTTGCTGGTCAGGTGGAATTCCTTCCTTATCTTGGATTTTAGCC 1220 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || |||||| || |||| | || ||||||||| | || || ||||| || Sbjct 1221 TTGACATTCTCAATGGTGTCAGAAGCTTCGAC-TTCGAGAGTGATCGTCTTTCCAGTGAG 1279 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||||| ||||| || ||||| Sbjct 1280 GGTTTTTACGAAGATCTGCAT 1300 >seq11380 Length=6731 Score = 100 bits (110), Expect = 2e-15 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||||||||||| ||||||||| || || ||||| ||||| ||||||||||| Sbjct 5768 TTACCAGCAAAAATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTTC 5827 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGT 563450 ||||| ||||||||||| | | | | || || || || | ||||| ||||| Sbjct 5828 GCCTTTACATTTTCAATTGTATCCGAG-GCTTCCACCTCAAGGGTGATCGTTTTTCCAGT 5886 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 ||| ||||| ||||| || ||||| Sbjct 5887 AAGTGTTTTCACGAAGATCTGCAT 5910 >seq41513 Length=9673 Score = 93.3 bits (102), Expect = 3e-13 Identities = 128/176 (73%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTG--GAC 552267 || || |||||||| ||||||||||||||||| | || || ||||| || || | ||| Sbjct 1911 AACCCTGATGAGGCCGTTGCCTATGGTGCCGCTGTCCAGGCTGCTATCCTCTCCGGTGAC 1852 Query 552268 AA-ACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326 || |||| | | | ||| || || | ||| | ||||| | ||||| || |||||| Sbjct 1851 AAGTCTGAGG---CAGTGCAAGATCTTCTGCTTCTCGATGTGGCACCTCTCTCACTTGGT 1795 Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCC 552382 | || |||| ||||||| | |||||| ||| ||| | || ||||| || || || Sbjct 1794 ATTGAGACAGCTGGAGGTGTGATGACTGCTCTGATCAAGAGGAATACCACCATCCC 1739 >seq43046 Length=7747 Score = 91.5 bits (100), Expect = 1e-12 Identities = 76/92 (83%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 550441 TCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGA 550500 ||| ||||| |||||||| |||| || ||||| | || ||||||||| ||||||| || Sbjct 4789 TCAGGCTACGAAAGATGCAGGACAGATAGCTGGTTTGAACGTTCTTCGTGTTATCAACGA 4730 Query 550501 ACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 ||||||||||| |||||||| ||||| |||| Sbjct 4729 GCCTACTGCTGCCGCACTTGCCTATGG-CTTG 4699 >seq21247 Length=2906 Score = 91.5 bits (100), Expect = 1e-12 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| ||||||| ||||||||| || || ||||| ||||| ||||||||||| Sbjct 2288 TTACCAGCAAAGATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTTC 2229 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGT 563450 ||||| ||||| ||||| | | | | || || || || | ||||| ||||| Sbjct 2228 GCCTTTACATTTTCAATCGTATCCGAG-GCTTCCACCTCAAGGGTGATCGTTTTTCCAGT 2170 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 ||| ||||| ||||| || ||||| Sbjct 2169 AAGTGTTTTCACGAAGATCTGCAT 2146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4025595089105690