Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq20539 98.7 8e-16 >seq20539 Length=3094 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || ||| ||| || || |||||||| || ||||| | ||| | || || Sbjct 177 ACCAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGATAGCGTGCGACCATCCTCG 236 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| |||||||| |||| || ||| ||||| | || | || |||||||| Sbjct 237 AGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGGATTCCTTCCTTGTCTTGG 296 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | | ||||||||||| ||||| | ||| ||||| || Sbjct 297 ATCTTGGCCTTCACGTTCTCGATTGTGTCTGACGCCTCGACCTCTAACGTGATCGTCTTC 356 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || ||||| |||||||| Sbjct 357 CCAGTAAGGGTCTTCACAAAGATCTGCAT 385 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 |||||| ||||| ||||||||||| ||||||| |||| ||| || ||||| |||||| Sbjct 849 CTTACCAGCAAAGATCAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGAATCTT 908 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | ||||||||||| ||||||| || |||||||| || || Sbjct 909 GGCCTTCACATTTTCGATTGTGTCTGACGCCTCGACCTCCAGAGTGATCGTTTTCCCAGT 968 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | || || ||||| |||||||| Sbjct 969 GAGGGTCTTCACAAAGATCTGCAT 992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380612700820863