Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq6967 118 7e-21 seq20539 95.1 8e-14 seq11380 87.8 1e-11 seq2989 86.0 4e-11 >seq6967 Length=10669 Score = 118 bits (130), Expect = 7e-21 Identities = 170/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 474641 GAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAA 474700 || || || || || | || ||| |||| ||| | |||||| | | || ||||| | Sbjct 8013 GATACGAAGCAGTTCACTCCCGAAGAAATCTCTGCCATGGTTCTCGGAAAGATGAAGGAG 8072 Query 474701 ACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATA 474759 | ||| ||| || || || ||| | ||||| | | || || | ||||| || || || Sbjct 8073 ATCGCCGAG-TCTTACCTCGGAAAGGAAGTGAAACACGCTGTCGTCACTGTGCCTGCCTA 8131 Query 474760 TTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGT 474819 || |||||| | ||||||||||| || || ||||| |||| ||||| || | ||||| Sbjct 8132 CTTCAATGATGCCCAACGTCAAGCCACCAAGGATGCCGGAACCATTGCTGGATTGAATGT 8191 Query 474820 TTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 | | || || ||||| || || ||||||||||| | || || |||||||| ||||| Sbjct 8192 TGTCCGAATCATTAACGAGCCTACAGCAGCCGCCATCGCCTACGGTCTTGACAAGAA 8248 >seq20539 Length=3094 Score = 95.1 bits (104), Expect = 8e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 480630 TTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTT 480689 || || || || || | |||||| || ||||| || ||||||||||||||||| ||||| Sbjct 1814 TTACCTGCGAAGATCAAACGTTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCTTA 1873 Query 480690 TGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGT 480748 |||||| || || || |||| || | | |||||| || || ||||||||||| Sbjct 1874 GCCTTGACATTCTCGATTGTGTCAGATGCCTCCA-CTTCAAGCGTGATGGTTTTACCGGT 1932 Query 480749 GAGAGTCTTAACGAAAATTTG 480769 ||| |||||||| || ||||| Sbjct 1933 GAGCGTCTTAACAAAGATTTG 1953 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| ||||||||||| || || || |||||||||||||||||||| |||||||| || || Sbjct 2455 CTTACCAGCAAAAATCAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTT 2514 Query 480689 TTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGT 480748 |||||| || || || |||| | || |||||||| || || || || Sbjct 2515 GGCCTTGACATTCTCGATGGTGTCAGACGCTTCGACCTCGAGGGTAATCGTCTTTCCAGT 2574 Query 480749 GAGAGTCTTAACGAAAATTTG 480769 || || |||||||||||||| Sbjct 2575 AAGCGTTTTAACGAAAATTTG 2595 >seq11380 Length=6731 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| |||||||||||||| ||||| ||||| || || ||||| || ||||||||||| || Sbjct 5767 CTTACCAGCAAAAATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTT 5826 Query 480689 TTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGT 480748 || ||| |||||| ||||| | | | |||||||| || ||||| || || Sbjct 5827 CGCCTTTACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGT 5886 Query 480749 GAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || || Sbjct 5887 AAGTGTTTTCACGAAGATCTG 5907 >seq2989 Length=17586 Score = 86.0 bits (94), Expect = 4e-11 Identities = 109/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 || || ||||| |||||||| || || ||| | ||| || || ||||| | || | Sbjct 15963 CGGAGTCGGAGCACAAGATGGAGAGTGGACTCTTTTTGGATG--TTGTAATCCGAGAGGG 16020 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | |||||| || ||||||| ||| || |||||||| || ||||| || || || | Sbjct 16021 TGCAACCATCTTCTAGCTGCTTTCTAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCC 16080 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGAC 480697 |||||||||| || |||||| |||||| Sbjct 16081 CTTCCTTGTCCTGGATCTTTGCTTTGAC 16108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265177375362188