Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq20539 114 2e-20 seq11380 89.7 9e-13 >seq20539 Length=3094 Score = 114 bits (126), Expect = 2e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||||||| | || | ||| || ||||| ||||| |||| ||| | | | Sbjct 171 CGAAGAACCAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGATAGCGTGCGACCA 230 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || ||||||||||| || |||||||| ||||| ||||| |||||||| || Sbjct 231 TCCTCGAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGGATTCCTTCCTTG 290 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| || | || || || || || | ||| || |||| || || Sbjct 291 TCTTGGATCTTGGCCTTCACGTTCTCGATTGTGTCTGACGCCTCGACCTCTAACGTGATC 350 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || ||||| || |||||| Sbjct 351 GTCTTCCCAGTAAGGGTCTTCACAAAGATCTGCATT 386 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || |||||||| | | ||| ||||||||||| ||||||||||| ||||| |||||| Sbjct 2456 TTACCAGCAAAAATCAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTG 2515 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | || | ||| || || || || | || || || || || || || || || || Sbjct 2516 GCCTTGACATTCTCGATGGTGTCAGACGCTTCGACCTCGAGGGTAATCGTCTTTCCAGTA 2575 Query 193338 AGCGTTTTTACAAATATTTGCATT 193361 |||||||| || || ||||||||| Sbjct 2576 AGCGTTTTAACGAAAATTTGCATT 2599 >seq11380 Length=6731 Score = 89.7 bits (98), Expect = 9e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || ||||||||||| | ||||| ||||| || || || ||||| || ||||| || || Sbjct 2494 TTACCGGCAAAAATGAGCCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATCTTT 2553 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | |||| || ||| || || |||| || |||||||| || || || || ||||| Sbjct 2554 GCCTTTACGTTCTCAATGGTGTCCGAAGCTTCGACTTCTAGGGTGATGGTCTTTCCTGTC 2613 Query 193338 AGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || || |||||| Sbjct 2614 AGCGTCTTCACGAAGATCTGCATT 2637 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 ||||||||||| | | ||| ||||| || || ||||| ||||| || || ||||| | Sbjct 3602 CCGGCAAAAATGAGACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCCTGGATTTTAGCC 3661 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | || || ||||| |||| ||| ||||| || || || || || ||||| || Sbjct 3662 TTGACGTTCTCGATGGTATCCGAAGCCTCGACTTCCAGGGTGATGGTCTTTCCTGTCAGG 3721 Query 193341 GTTTTTACAAATATTTGCATT 193361 ||||| || || ||||||||| Sbjct 3722 GTTTTCACGAAGATTTGCATT 3742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898867416067920