Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq21247 96.9 7e-15 seq11380 91.5 3e-13 seq20539 89.7 1e-12 >seq21247 Length=2906 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 |||||||||||||| | || || ||||| ||||| ||||| ||||| ||||| ||||| Sbjct 2288 TTACCAGCAAAGATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTTC 2229 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 |||||||| || | ||| || | ||| || || || || || ||||| ||||| Sbjct 2228 GCCTTTACATTTTCAATCGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGTA 2169 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 | |||||| | || |||||||| Sbjct 2168 AGTGTTTTCACGAAGATCTGCAT 2146 >seq11380 Length=6731 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || | || || ||||| ||||| ||||| ||||| ||||| ||||| Sbjct 5768 TTACCAGCAAAAATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTTC 5827 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 |||||||| || | ||| || | ||| || || || || || ||||| ||||| Sbjct 5828 GCCTTTACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGTA 5887 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 | |||||| | || |||||||| Sbjct 5888 AGTGTTTTCACGAAGATCTGCAT 5910 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 |||||||||||||| | | ||| ||||| ||||| || ||||| ||||| || || ||| Sbjct 4329 TTACCAGCAAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTATCCTGGATCTTA 4388 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || || || |||| |||||| | || ||||| || || ||||| || ||||| Sbjct 4389 GCCTTGACGTTCTCGATAGTATCTGAAGCCTCGACTTCCAGGGTGATGGTCTTTCCAGTC 4448 Query 192514 AATGTTTTAATAAATATCTGCATT 192537 | ||||| | || ||||||||| Sbjct 4449 AGAGTTTTCACGAAGATCTGCATT 4472 >seq20539 Length=3094 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 |||||||||||||| | || ||| ||||| || || || |||||||| ||||| || || Sbjct 850 TTACCAGCAAAGATCAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGAATCTTG 909 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || ||||| || | ||||||| || || || ||||| || ||||| ||||| Sbjct 910 GCCTTCACATTTTCGATTGTGTCTGACGCCTCGACCTCCAGAGTGATCGTTTTCCCAGTG 969 Query 192514 AATGTTTTAATAAATATCTGCATT 192537 | || || | ||| ||||||||| Sbjct 970 AGGGTCTTCACAAAGATCTGCATT 993 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || | | ||| |||||||| || ||||||||||| ||||| ||||| Sbjct 2456 TTACCAGCAAAAATCAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTG 2515 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || ||||| || | || |||| ||| || || || ||||| || || ||||| Sbjct 2516 GCCTTGACATTCTCGATGGTGTCAGACGCTTCGACCTCGAGGGTAATCGTCTTTCCAGTA 2575 Query 192514 AATGTTTTAATAAATATCTGCATT 192537 | ||||||| || || |||||| Sbjct 2576 AGCGTTTTAACGAAAATTTGCATT 2599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983597284159350