Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq20539 105 1e-17 seq11380 100 5e-16 seq21247 96.9 6e-15 >seq20539 Length=3094 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| || ||||||| || || ||||||||||| |||||||| |||||||| |||||| Sbjct 1159 TACCTGCGAAAATTAGTCGTTGCTGGTCAGGTGGAATTCCTTCCTTATCTTGGATTTTAG 1218 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 || ||||| || || || || | ||| ||||| ||||| || || || ||||| | Sbjct 1219 CCTTGACATTCTCAATGGTGTCAGAAGCTTCGACTTCGAGAGTGATCGTCTTTCCAGTGA 1278 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 ||||| | ||| ||||||||| Sbjct 1279 GGGTTTTTACGAAGATCTGCATT 1301 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 |||||||||||||| | | ||| || ||||| || ||||||||||| ||||| ||||| Sbjct 2456 TTACCAGCAAAAATCAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTG 2515 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 || ||||| || || || |||| ||| || || || ||||| || || ||||| Sbjct 2516 GCCTTGACATTCTCGATGGTGTCAGACGCTTCGACCTCGAGGGTAATCGTCTTTCCAGTA 2575 Query 172047 AATGTTTTAATGAATATCTGCATT 172070 | ||||||| ||| || |||||| Sbjct 2576 AGCGTTTTAACGAAAATTTGCATT 2599 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| ||||| || | || ||| ||||||||||| |||||||| || ||||| || || Sbjct 1443 TACCCGCAAAGATCAGTCGCTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTGGATCTTGG 1502 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| ||||| || || | ||||| || || || || ||||| ||||| | Sbjct 1503 CTTTAACATTCTCGATAGTGTCGGAAGCCTCTACCTCGAGTGTGATAGTTTTGCCAGTAA 1562 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || || | || ||||||||| Sbjct 1563 GCGTCTTGACAAAAATCTGCATT 1585 >seq11380 Length=6731 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 |||||||||||||| | || || || || ||||| ||||| ||||| ||||| ||||| Sbjct 5768 TTACCAGCAAAAATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTTC 5827 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 |||||||| || ||||| || | ||| || || || || || ||||| ||||| Sbjct 5828 GCCTTTACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGTA 5887 Query 172047 AATGTTTTAATGAATATCTGCAT 172069 | |||||| | ||| |||||||| Sbjct 5888 AGTGTTTTCACGAAGATCTGCAT 5910 Score = 89.7 bits (98), Expect = 9e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||||||||| || | | ||| || || ||||| || ||||| ||||| || || ||| Sbjct 4329 TTACCAGCAAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTATCCTGGATCTTA 4388 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 || || || ||||||||||| | || ||||| || || ||||| || ||||| Sbjct 4389 GCCTTGACGTTCTCGATAGTATCTGAAGCCTCGACTTCCAGGGTGATGGTCTTTCCAGTC 4448 Query 172047 AATGTTTTAATGAATATCTGCATT 172070 | ||||| | ||| ||||||||| Sbjct 4449 AGAGTTTTCACGAAGATCTGCATT 4472 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||||||||| || | | ||| ||||||||||| ||||| || ||||| || || || Sbjct 4694 TTACCAGCAAAGATAAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCCTGGATCTTG 4753 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 |||||| || || ||||| || | || || || ||||| ||||| || ||||| Sbjct 4754 GCTTTTACGTTCTCAATCGTATCGGAAGCCTCGACCTCCAGAGTGATGGTCTTTCCAGTC 4813 Query 172047 AATGTTTTAATGAATATCTGCATT 172070 | || || | ||| || |||||| Sbjct 4814 AGGGTCTTCACGAAGATTTGCATT 4837 >seq21247 Length=2906 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||||||||| || | || || || || ||||| ||||| ||||| ||||| ||||| Sbjct 2288 TTACCAGCAAAGATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTTC 2229 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 |||||||| || ||||| || | ||| || || || || || ||||| ||||| Sbjct 2228 GCCTTTACATTTTCAATCGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGTA 2169 Query 172047 AATGTTTTAATGAATATCTGCAT 172069 | |||||| | ||| |||||||| Sbjct 2168 AGTGTTTTCACGAAGATCTGCAT 2146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904344220969800