Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq13364 156 5e-32 seq50540 147 3e-29 seq1167 134 2e-25 seq56617 129 7e-24 seq47866 129 7e-24 seq16030 129 7e-24 seq50548 125 9e-23 seq44077 125 9e-23 seq3337 120 4e-21 seq7654 93.3 5e-13 seq41851 87.8 2e-11 seq10310 86.0 8e-11 >seq13364 Length=5686 Score = 156 bits (172), Expect = 5e-32 Identities = 167/218 (77%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| ||| | | ||||||||| |||||||||||||||||||| | | || Sbjct 1982 GCTTGGCGAGTTCTCCGGGGAGGATCAGGCGGACGGCGGTCTGGATCTCGCGGGAGGAGA 2041 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| ||||||||| | ||||| || || |||||| | ||||||| |||| || Sbjct 2042 TCGTCGAGCGCTTGTTGTACTGCGCGAGTCGCGACGCCTCGACGGCGATGCGCTCGAACA 2101 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| ||||||| ||| || | || |||||||| Sbjct 2102 CGTCGTTCACGAACGAGTTCATGATGGACATCGCCTTCGACGACACTCCAGTGTCGGGGT 2161 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTA 1254559 |||||||||| ||||| ||||||| | ||| ||||| Sbjct 2162 GCACCTGCTTCAGCACACGGTAGATGTA-GACGGAGTA 2198 >seq50540 Length=1801 Score = 147 bits (162), Expect = 3e-29 Identities = 150/196 (77%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| ||| | | ||||||||| |||||||||||||| ||||| | | || Sbjct 197 GCTTGGCGAGTTCTCCGGGGAGGATCAGGCGGACGGCGGTCTGGATTTCGCGGGAGGAGA 138 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| ||||||||| | ||||| || || |||||| | ||||||| |||| || Sbjct 137 TCGTCGAGCGCTTGTTGTACTGCGCGAGTCGCGACGCCTCGACGGCGATGCGCTCGAACA 78 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| ||||||| ||| || | || |||||||| Sbjct 77 CGTCGTTCACGAACGAGTTCATGATGGACATCGCCTTCGACGACACTCCGGTGTCGGGGT 18 Query 1254523 GCACCTGCTTGAGCAC 1254538 |||||||||| ||||| Sbjct 17 GCACCTGCTTCAGCAC 2 >seq1167 Length=29528 Score = 134 bits (148), Expect = 2e-25 Identities = 162/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | ||||||||| |||||||||||||| ||||| | | || Sbjct 19540 GCTTGGCGAGCTCCCCGGGGAGGATCAGGCGGACGGCGGTCTGGATTTCGCGGGAGGAGA 19481 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| ||||||||| | || || || || ||||| ||||||| |||| | Sbjct 19480 TCGTCGAGCGCTTGTTGTACTGGGCAAGGCGAGAAGCCTCAACAGCGATGCGCTCGAAGA 19421 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| ||||||| ||| |||| || |||||||| Sbjct 19420 CGTCGTTCACGAACGAGTTCATGATGGACATCGCCTTCGACGAGACACCGGTGTCGGGGT 19361 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTA 1254559 |||||||||| ||||| ||||||| | ||| ||||| Sbjct 19360 GCACCTGCTTCAGCACGCGGTAGATGTA-GACGGAGTA 19324 Score = 118 bits (130), Expect = 1e-20 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 1254354 TCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGC 1254413 || ||| | | ||||||||| |||||||||||||| ||||| | | |||||| ||| Sbjct 18967 TCTCCGGGGAGGATCAGGCGGACGGCGGTCTGGATTTCGCGGGAGGAGATCGTCGAGCGT 18908 Query 1254414 TTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACA 1254473 ||||| | || || || || ||||| ||||||| || | | |||||| || Sbjct 18907 TTGTTGTACTGGGCAAGGCGAGAAGCCTCAACAGCGATGCGCTCAAAGACGTCGTTCACG 18848 Query 1254474 AACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTG 1254533 ||||||||||||| ||||||| ||| |||| || |||||||||||||||||| Sbjct 18847 AACGAGTTCATGATGGACATCGCCTTCGACGAGACACCGGTGTCGGGGTGCACCTGCTTC 18788 Query 1254534 AGCACCTTGTAGATGAACGAC-GAGTA 1254559 ||||| ||||||| | ||| ||||| Sbjct 18787 AGCACGCGGTAGATGTA-GACGGAGTA 18762 >seq56617 Length=1366 Score = 129 bits (142), Expect = 7e-24 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | ||||||||| |||||||||||||| ||||| | | || Sbjct 462 GCTTGGCGAGCTCTCCGGGGAGGATCAGGCGGACGGCGGTCTGGATTTCGCGGGAGGAGA 403 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| ||||||||| | || || || || ||||| ||||||| || | | Sbjct 402 TCGTCGAGCGCTTGTTATACTGGGCAAGGCGAGAAGCCTCAACAGCGATGCGCTCAAAGA 343 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| ||||||| ||| |||| || |||||||| Sbjct 342 CGTCGTTCACGAACGAGTTCATGATGGACATCGCCTTCGACGAGACACCGGTGTCGGGGT 283 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTA 1254559 |||||||||| ||||| ||||||| | ||| ||||| Sbjct 282 GCACCTGCTTCAGCACACGGTAGATGTA-GACGGAGTA 246 >seq47866 Length=2187 Score = 129 bits (142), Expect = 7e-24 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | ||||||||| |||||||||||||| ||||| | | || Sbjct 508 GCTTGGCGAGCTCCCCGGGGAGGATCAGGCGGACGGCGGTCTGGATTTCGCGGGAGGAGA 449 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| ||||||||| | ||||| || || ||||| ||||||| |||| | Sbjct 448 TCGTCGAGCGCTTGTTGTACTGCGCGAGTCGCGACGCCTCAACAGCGATGCGCTCGAAGA 389 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || || |||||||| | ||||||| ||| |||| || |||||||| Sbjct 388 CGTCGTTCACGAAAGAGTTCATTATGGACATCGCCTTCGACGAGACACCGGTGTCGGGGT 329 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTA 1254559 |||||||||| ||||| ||||||| | ||| ||||| Sbjct 328 GCACCTGCTTCAGCACGCGGTAGATGTA-GACGGAGTA 292 >seq16030 Length=4730 Score = 129 bits (142), Expect = 7e-24 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| ||| | | ||| ||||| || ||||||||||| ||||| | | || Sbjct 4238 GCTTGGCGAGTTCTCCGGGAAGGATGAGGCGGACAGCGGTCTGGATTTCGCGAGAGGAGA 4297 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||||| |||||||| | || || || || ||||| | ||||||| |||| | Sbjct 4298 TCGTGGATCGCTTGTTGTACTGGGCAAGGCGAGAAGCCTCAACGGCGATGCGCTCGAAGA 4357 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| ||||||| ||| |||| || ||| || | Sbjct 4358 CGTCGTTCACGAACGAGTTCATGATGGACATCGCCTTCGACGAGACACCGGTGTCCGGAT 4417 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTA 1254559 |||||||||||||||| ||||||| | ||| ||||| Sbjct 4418 GCACCTGCTTGAGCACACGGTAGATGTA-GACGGAGTA 4454 >seq50548 Length=1800 Score = 125 bits (138), Expect = 9e-23 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | ||||||||| |||||||||||||| ||||| | | || Sbjct 1298 GCTTGGCGAGCTCTCCGGGGAGGATCAGGCGGACGGCGGTCTGGATTTCGCGGGAGGAGA 1357 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| ||| ||||| | || || || || ||||| ||||||| || | | Sbjct 1358 TCGTCGAGCGTTTGTTGTACTGGGCAAGGCGAGAAGCCTCAACAGCGATGCGCTCAAAGA 1417 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| ||||||| ||| |||| || |||||||| Sbjct 1418 CGTCGTTCACGAACGAGTTCATGATGGACATCGCCTTCGACGAGACACCGGTGTCGGGGT 1477 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTA 1254559 |||||||||| ||||| ||||||| | ||| ||||| Sbjct 1478 GCACCTGCTTCAGCACACGGTAGATGTA-GACGGAGTA 1514 >seq44077 Length=3746 Score = 125 bits (138), Expect = 9e-23 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | |||||||| |||||||||||||| ||||| | || Sbjct 522 GCTTGGCGAGCTCTCCGGGGAGTATCAGGCGGACGGCGGTCTGGATTTCGCGGGATGAGA 463 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || || || || ||||| ||||||| |||| | Sbjct 462 TAGTCGAGCGCTTGTTGTACTGGGCAAGGCGAGAAGCCTCAACAGCGATGCGCTCGAAGA 403 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| |||||||| ||| || | || |||||||| Sbjct 402 CGTCGTTCACGAACGAGTTCATGATCGACATCGCCTTCGACGACACACCGGTGTCGGGGT 343 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||| ||||| ||||||| || |||||| Sbjct 342 GCACCTGCTTCAGCACACGGTAGATGTACACCGAGTA 306 >seq3337 Length=44239 Score = 120 bits (132), Expect = 4e-21 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | ||||||||| || ||||||||||| ||||| | | || Sbjct 12771 GCTTGGCGAGCTCTCCAGGAAGGATCAGGCGGACAGCGGTCTGGATTTCGCGGGAGGAGA 12830 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| |||||||| | || || || || ||||| ||||||| |||| | Sbjct 12831 TCGTCGATCGCTTGTTGTACTGGGCGAGTCGCGACGCCTCCACAGCGATGCGCTCGAAGA 12890 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| ||||||| ||| |||| || |||||||| Sbjct 12891 CGTCGTTCACGAACGAGTTCATGATGGACATCGCCTTCGACGAGACACCGGTGTCGGGGT 12950 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||| ||||| ||||||| Sbjct 12951 GCACCTGCTTCAGCACACGGTAGATG 12976 >seq7654 Length=11083 Score = 93.3 bits (102), Expect = 5e-13 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| || | | ||| ||||| || ||||||||||| ||||| | | || Sbjct 2503 GCTTGGCGAGTTCTCCAGGAAGGATGAGGCGGACAGCGGTCTGGATTTCGCGAGAGGAGA 2444 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||||| |||||||| | || || || || ||||| | ||||||| |||| | Sbjct 2443 TCGTGGATCGCTTGTTGTACTGGGCAAGGCGAGAAGCCTCAACGGCGATGCGCTCGAAGA 2384 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACAT 1254493 |||||| || ||||||||||||| ||||| Sbjct 2383 CGTCGTTCACGAACGAGTTCATGATGGACAT 2353 >seq41851 Length=13287 Score = 87.8 bits (96), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || ||| ||| |||||| || || || |||||||| || |||| | Sbjct 1012 GCTTGGCCAACTCTCCGGGCAGGATCAGTCGAACAGCAGTCTGGATTTCTCGCGATGAAA 953 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || | |||||| | ||||||||||| ||| || | | || || |||| | Sbjct 952 TAGTCGACCTCTTGTTGTACTGCGCCAGACGAGAGGCTTCAGCAGCAATACGCTCGAATA 893 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| ||||||||||| | ||||| | ||| || | ||| ||||||| Sbjct 892 CGTCGTTGACGAACGAGTTCATAATAGACATAGCTTTGGACGAAACGCCAGTATCGGGGT 833 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || ||||| || || ||||||| Sbjct 832 GGACTTGCTTCAGGACACGGTAGATG 807 >seq10310 Length=8357 Score = 86.0 bits (94), Expect = 8e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||| || |||||||| ||| | |||||| || || | | || || ||| | Sbjct 1481 AGAAACGTACCGACGATATCCCAAGTTGGGACGTAGAATTCCTCAAGGTGGATCAGGGTA 1422 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | | || || | ||||| || || ||||||||||||||||| ||| || || || Sbjct 1421 CTTTGTTCGAACTTATCCTGGCTGCGAACTACCTCGACATCAAAGGTCTACTTGACGTTA 1362 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | || ||||| ||||| ||||| || | || ||||||||||| |||| Sbjct 1361 CCTGCAAGACAGTTGCCAATATGATTAAGGGTAAAACTCCAGAGGAGATCCGGCGCACCT 1302 Query 1592286 TTAACATCAAGTACG 1592300 | ||||| ||| ||| Sbjct 1301 TCAACATTAAGAACG 1287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6101396231418977