Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq20539 122 8e-23 seq2989 109 5e-19 seq11380 104 2e-17 seq21247 96.9 3e-15 seq7012 89.7 5e-13 >seq20539 Length=3094 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||| | || || || || | Sbjct 385 ATGCAGATCTTTGTGAAGACCCTTACTGGGAAGACGATCACGTTAGAGGTCGAGGCGTCA 326 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||||||||||| |||||||| ||||||||||| Sbjct 325 GACACAATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGATCAG 266 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||| || ||||| |||||| | | | ||||| || || Sbjct 265 CAGAGATTGATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGCACGCTATCAGACTACAAT 206 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || || |||| | || | || ||||| Sbjct 205 ATCCAGAAGGAGTCCACTCTCCATCTGGTTCTTCGTCTTCGTGGAGG 159 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| |||| ||||| ||||||||||| || ||||| ||||| || || | Sbjct 1956 ATGCAAATCTTTGTTAAGACGCTCACCGGTAAAACCATCACGCTTGAAGTGGAGGCATCT 1897 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||||||||||| |||||||| || || || || Sbjct 1896 GACACAATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCTGACCAG 1837 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 |||||||||||||| || || || Sbjct 1836 CAACGTTTGATCTTCGCAGGTAA 1814 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || ||||| || || |||||||| || ||||| ||||| || || Sbjct 1584 ATGCAGATTTTTGTCAAGACGCTTACTGGCAAAACTATCACACTCGAGGTAGAGGCTTCC 1525 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||||||||| |||||||| || || || || Sbjct 1524 GACACTATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCTGACCAG 1465 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || |||||||||| || Sbjct 1464 CAGCGACTGATCTTTGCGGG 1445 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || ||||| || || || || || || || | Sbjct 992 ATGCAGATCTTTGTGAAGACCCTCACTGGGAAAACGATCACTCTGGAGGTCGAGGCGTCA 933 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || || ||||| |||||||||||||| || ||||| ||||| Sbjct 932 GACACAATCGAAAATGTGAAGGCCAAGATTCAAGACAAAGAAGGCATTCCTCCGGATCAG 873 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || || |||||||||| || || Sbjct 872 CAGCGACTGATCTTTGCTGGTAA 850 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| || || |||||||||| || || || || ||||| ||||| || ||||| Sbjct 2601 ACAATGCAAATTTTCGTTAAAACGCTTACTGGAAAGACGATTACCCTCGAGGTCGAAGCG 2542 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || || |||||||||||||||||||| ||||| ||| Sbjct 2541 TCTGACACCATCGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGAATTCCTCCTGAT 2482 Query 24821 CAACAACGTTTGATCTTTGCCGGGAA 24846 || || || |||| ||||| || || Sbjct 2481 CAGCAGCGCCTGATTTTTGCTGGTAA 2456 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || ||||| ||||| || || || ||| | Sbjct 690 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACTATCACGCTTGAGGTCGAGGCCTCT 631 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| |||||||| |||||||| || Sbjct 630 GACACCATTGAGAATGTTAAGGCGAAGATCCAGGACAAGGAAGGAATCCCTCCCGACCAG 571 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || | ||||| || || Sbjct 570 CAGCGACTAATCTTCGCAGG 551 >seq2989 Length=17586 Score = 109 bits (120), Expect = 5e-19 Identities = 167/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || || || ||||| | ||| | Sbjct 15955 ATGCAGATCTTCGTGAAGACGCTGACAGGGAAGACCATCACCCTTGAAGTCGGAGCTTCG 15896 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||| ||||||||||| || ||| | ||||| Sbjct 15895 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTGCAGATCAG 15836 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || || ||||| ||||| || ||||| | | | || || || || Sbjct 15835 CAGAGGCTTATATTCGCCGGCAAACAACTCGAGGACGGTCGTACTCTTTCCGACTACAAT 15776 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC-GGAACTGA 24939 || || || ||||| ||||| ||||||||| | || | || |||||| | |||||| Sbjct 15775 ATCCAGAAAGAATCCACACTCCACTTGGTGCTTCGCCTTCGTGGAGGCTGCAACTGA 15719 >seq11380 Length=6731 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||| | ||||| || || || || |||||||| || || | Sbjct 5209 ATGCAGATTTTCGTGAAGACGTTGACCGGAAAGACGATCACACTCGAAGTGGAGGCTTCA 5150 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || ||| |||||||||||||||||| ||||| || || ||||| Sbjct 5149 GACACAATCGAAAATGTCAAAGCAAAGATCCAAGACAAAGAGGGAATTCCACCAGATCAG 5090 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| | ||||| ||||| Sbjct 5089 CAACGACTTATCTTCGCCGG 5070 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || ||||| || || || || || |||||| | Sbjct 5910 ATGCAGATCTTCGTGAAAACACTTACTGGAAAAACGATCACCCTTGAGGTGGAAGCCTCG 5851 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| ||||| || || ||||||||||| ||||| || |||||||| Sbjct 5850 GATACAATTGAAAATGTAAAGGCGAAAATTCAAGACAAAGAGGGAATCCCACCCGATCAG 5791 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||| | || ||||| || || Sbjct 5790 CAACGACTTATTTTTGCTGGTAA 5768 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || || || ||||| ||||| | Sbjct 2636 ATGCAGATCTTCGTGAAGACGCTGACAGGAAAGACCATCACCCTAGAAGTCGAAGCTTCG 2577 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||| |||||||| ||||| || || || ||||| Sbjct 2576 GACACCATTGAGAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATCCCACCAGATCAG 2517 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || | | || |||||||| || Sbjct 2516 CAGAGGCTCATTTTTGCCGGTAA 2494 >seq21247 Length=2906 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || ||||| || || || || || |||||| | Sbjct 2146 ATGCAGATCTTCGTGAAAACACTTACTGGAAAAACGATCACCCTTGAGGTGGAAGCCTCG 2205 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| ||||| || || ||||||||||| ||||| || |||||||| Sbjct 2206 GATACGATTGAAAATGTAAAGGCGAAAATTCAAGACAAAGAGGGAATCCCACCCGATCAG 2265 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||| | |||||||| || || Sbjct 2266 CAACGACTTATCTTTGCTGGTAA 2288 >seq7012 Length=10378 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||| | || || || || || || || || |||||||| || || ||| | Sbjct 4288 ATGCAAGTCTTCGTGAAGACTCTCACGGGGAAGACAATCACGCTCGAGGTTGAGGCCTCG 4347 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || | |||||||||||||| || || || || || ||||| Sbjct 4348 GACACGATCGAGAATGTGCAGGCTAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAG 4407 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || ||||| |||||| | | |||| || || ||| Sbjct 4408 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACTCTGTCGGACTACAAC 4467 Query 24884 ATTCAAAAGGAATC 24897 ||||| ||||| || Sbjct 4468 ATTCAGAAGGAGTC 4481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449504046450680