Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq20539 109 4e-19 seq7012 105 4e-18 seq21247 93.3 3e-14 >seq20539 Length=3094 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 |||||||| | | | || ||||| || | ||| ||||||||| || || ||||| Sbjct 156 TTTCCTCCACGAAGACGAAGAACCAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCT 215 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 ||||| |||| |||| || || ||||||||||| ||||||| || ||||| || | Sbjct 216 GATAGCGTGCGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCGGGA 275 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || |||||||| | || || || ||| | || | || |||||| Sbjct 276 GGGATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATTGTGTCTGACGCCTCG 335 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | || || ||||| || || |||||||| |||||||||||||| Sbjct 336 ACCTCTAACGTGATCGTCTTCCCAGTAAGGGTCTTCACAAAGATCTGCAT 385 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/142 (74%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || |||||||| ||||| |||||||| | || | || |||||||| | || || Sbjct 551 CCTGCGAAGATTAGTCGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTCGCC 610 Query 34898 TTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGA 34955 || || || || || | ||| ||||||||| |||| || || ||||| || |||| Sbjct 611 TTAAC--ATTCTCAATGGTGTCAGAGGCCTCGACCTCAAGCGTGATAGTCTTCCCAGTGA 668 Query 34956 GGGTCTTTACAAAGATCTGCAT 34977 ||||||| |||||||||||||| Sbjct 669 GGGTCTTGACAAAGATCTGCAT 690 >seq7012 Length=10378 Score = 105 bits (116), Expect = 4e-18 Identities = 153/211 (73%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 34772 AGGTGAATGG-TGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAG 34830 ||||| | || || ||||||||||||||| |||||||| || | || |||| || || Sbjct 4494 AGGTGGAGGGATGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCATCCTCGAG 4435 Query 34831 TTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTAT 34890 |||||||| |||||||| || || ||||| || | || | ||||||||||| || Sbjct 4434 CTGCTTTCCAGCGAAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTC-TTGGA 4376 Query 34891 TTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 | || | || | || || |||| || |||||| || || | || || ||||| Sbjct 4375 TCTTAGCCTG-CACATTCTCGATCGTGTCCGAGGCCTCAACCTCGAGCGTGATTGTCTTC 4317 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979 |||||||| ||||| || |||| ||||||| Sbjct 4316 CCCGTGAGAGTCTTCACGAAGACTTGCATGA 4286 >seq21247 Length=2906 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| ||||| ||||| || || ||||||||| | || | |||||||||||| | ||||| Sbjct 2644 CTTACCGGCAAAGATAAGGCGCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATTTT 2585 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 || ||| | || | || ||| ||||| || | ||| ||||||||||| || Sbjct 2584 GGCCTTCACGTTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTTCCAGT 2525 Query 34954 GAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || ||||||||||| Sbjct 2524 CAGGGTCTTGACGAAGATCTGCAT 2501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325415018748239