Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2989 111 1e-19 seq20539 96.9 3e-15 seq21247 91.5 1e-13 seq11380 91.5 1e-13 >seq2989 Length=17586 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || |||||||| || || ||||||||||| || || || || || | || || ||| Sbjct 15741 CGAAGCACCAAGTGGAGTGTGGATTCTTTCTGGATATTGTAGTCGGAAAGAGTACGACCG 15800 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || |||||||||||||| || |||| | || |||||||| | |||||||| |||||| Sbjct 15801 TCCTCGAGTTGTTTGCCGGCGAATATAAGCCTCTGCTGATCTGCAGGAATACCTTCTTTG 15860 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || || | || | ||||| ||| | | |||||||| || || Sbjct 15861 TCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCCGAAGCTCCGACTTCAAGGGTGATG 15920 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || | || || || || ||||||||| Sbjct 15921 GTCTTCCCTGTCAGCGTCTTCACGAAGATCTGCATT 15956 >seq20539 Length=3094 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | |||| || ||||||||||| ||||| || ||||||||||| ||| || Sbjct 850 TTACCAGCAAAGATCAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTG-AATCTT 908 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | || ||| |||| | ||||| || || || || ||||| || ||||| ||||| Sbjct 909 GGCCTTCACATTTTCGATTGTGTCTGACGCCTCGACCTCCAGAGTGATCGTTTTCCCAGT 968 Query 29763 TAAGGTTTTAACAAATATCTGCATT 29787 | ||| || ||||| ||||||||| Sbjct 969 GAGGGTCTTCACAAAGATCTGCATT 993 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 || ||| | |||| || ||||| || || ||||| || || |||||||| | || | Sbjct 1445 CCCGCAAAGATCAGTCGCTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCT 1504 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || ||| | || | |||||| ||| ||||| || || || |||||||||||||| | Sbjct 1505 TTAACATTCTCGATAGTGTCGGAAGCCTCTACCTCGAGTGTGATAGTTTTGCCAGTAAGC 1564 Query 29767 GTTTTAACAAATATCTGCATT 29787 || || ||||| ||||||||| Sbjct 1565 GTCTTGACAAAAATCTGCATT 1585 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | |||| | |||||||| || ||||| || ||||||||||| | ||| Sbjct 2456 TTACCAGCAAAAATCAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTG 2515 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 |||||| | || | |||||||| ||| || || || || || || || ||||| Sbjct 2516 GCCTTGACATTCTCGATGGTGTCAGACGCTTCGACCTCGAGGGTAATCGTCTTTCCAGTA 2575 Query 29764 AAGGTTTTAACAAATATCTGCATT 29787 | |||||||| || || |||||| Sbjct 2576 AGCGTTTTAACGAAAATTTGCATT 2599 >seq21247 Length=2906 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | || | || ||||||||| || || || |||||||||||||| |||||| Sbjct 2288 TTACCAGCAAAGATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTG-AATTTT 2230 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | || ||| |||| | || || || ||| || ||||| || || ||||| ||||| Sbjct 2229 CGCCTTTACATTTTCAATCGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGT 2170 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || || |||||||| Sbjct 2169 AAGTGTTTTCACGAAGATCTGCAT 2146 >seq11380 Length=6731 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | || | || ||||||||| || || || |||||||||||||| |||||| Sbjct 5768 TTACCAGCAAAAATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTG-AATTTT 5826 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | || ||| |||| | || || || ||| || ||||| || || ||||| ||||| Sbjct 5827 CGCCTTTACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGT 5886 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || || |||||||| Sbjct 5887 AAGTGTTTTCACGAAGATCTGCAT 5910 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 29661 TCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTAC 29720 || ||||||||| || ||||| |||||||||||||| | ||| ||||||| |||| | Sbjct 5084 TCGTTGCTGATCTGGTGGAATTCCCTCTTTGTCTTGGATCTTTGCTTTGACATTTTCGAT 5143 Query 29721 AGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATAT 29780 ||||| ||| || ||||| || || || || || || || || || || || || || Sbjct 5144 TGTGTCTGAAGCCTCCACTTCGAGTGTGATCGTCTTTCCGGTCAACGTCTTCACGAAAAT 5203 Query 29781 CTGCATT 29787 ||||||| Sbjct 5204 CTGCATT 5210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384890649072321