Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2989 150 4e-31 seq20539 141 2e-28 seq11380 120 6e-22 seq21247 105 1e-17 >seq2989 Length=17586 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || || ||||||||||| ||||| || || || ||| | | |||| Sbjct 15741 CGAAGCACCAAGTGGAGTGTGGATTCTTTCTGGATATTGTAGTCGGAAAGAGTACGACCG 15800 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || |||||||| || || || || || || || ||||||| ||| || ||||| || Sbjct 15801 TCCTCGAGTTGTTTGCCGGCGAATATAAGCCTCTGCTGATCTGCAGGAATACCTTCTTTG 15860 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || ||||| || ||||| || || || | | ||||| | || || Sbjct 15861 TCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCCGAAGCTCCGACTTCAAGGGTGATG 15920 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| ||||||| |||||| || || ||||||||| Sbjct 15921 GTCTTCCCTGTCAGCGTCTTCACGAAGATCTGCATT 15956 Score = 131 bits (144), Expect = 3e-25 Identities = 137/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || ||||| || || || ||||| || || | | ||| |||||||| || Sbjct 15981 TGGAGAGTGGACTCTTTTTGGATGTTGTAATCCGAGAGGGTGCAACCATCTTCTAGCTGC 16040 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 |||| ||| ||||| || | || |||||||| || || |||||||| || || |||||| Sbjct 16041 TTTCTAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGGATCTTT 16100 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| || || || || ||||| || ||| ||||||||||| || ||||| || ||| Sbjct 16101 GCTTTGACGTTCTCGATGGTATCCGAAGCTTCGACTTCCAAAGTGATAGTCTTTCCAGTC 16160 >seq20539 Length=3094 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| ||||| | || ||||| || || ||||| ||||| || || ||| Sbjct 159 CCTCCACGAAGACGAAGAACCAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGAT 218 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || || || || ||||| |||||||| | ||| || ||||| ||||| Sbjct 219 AGCGTGCGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGG 278 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||| ||||| || || || || || || || || | || || Sbjct 279 ATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATTGTGTCTGACGCCTCGACC 338 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || |||||||| || || | ||||| ||||| ||||||||| Sbjct 339 TCTAACGTGATCGTCTTCCCAGTAAGGGTCTTCACAAAGATCTGCATT 386 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || || ||||||| ||| || || || || ||||||||||||||||| || || || Sbjct 1161 CCTGCGAAAATTAGTCGTTGCTGGTCAGGTGGAATTCCTTCCTTATCTTGGATTTTAGCC 1220 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| ||||| || ||| || ||| ||||| | ||| |||||||| || || | Sbjct 1221 TTGACATTCTCAATGGTGTCAGAAGCTTCGACTTCGAGAGTGATCGTCTTTCCAGTGAGG 1280 Query 82791 GTCTTTACAAATATCTGCATT 82811 || ||||| || ||||||||| Sbjct 1281 GTTTTTACGAAGATCTGCATT 1301 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| |||| || ||||| ||||| || ||||| || ||||||||||| Sbjct 850 TTACCAGCAAAGATCAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGAATCTTG 909 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || |||||||| || || || | || || |||| ||| ||||| || || || Sbjct 910 GCCTTCACATTTTCGATTGTGTCTGACGCCTCGACCTCCAGAGTGATCGTTTTCCCAGTG 969 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| ||||| ||||||||| Sbjct 970 AGGGTCTTCACAAAGATCTGCATT 993 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| |||| || || || || || ||||||||||| ||||| ||||| ||| Sbjct 1445 CCCGCAAAGATCAGTCGCTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCT 1504 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| || || || || || ||||| || | || || || ||||| || | | Sbjct 1505 TTAACATTCTCGATAGTGTCGGAAGCCTCTACCTCGAGTGTGATAGTTTTGCCAGTAAGC 1564 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| ||||||||| Sbjct 1565 GTCTTGACAAAAATCTGCATT 1585 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || |||||||||| || || || ||||| ||||||||||| || || ||||| || Sbjct 551 CCTGCGAAGATTAGTCGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTCGCC 610 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| ||||| || ||| | || || || | || || ||||| || || | Sbjct 611 TTAACATTCTCAATGGTGTCAGAGGCCTCGACCTCAAGCGTGATAGTCTTCCCAGTGAGG 670 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| ||||||||| Sbjct 671 GTCTTGACAAAGATCTGCATT 691 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || || || | || || || ||||| || ||||||||||| ||||| ||||| || Sbjct 2125 CCTGCGAAAATCAATCGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCC 2184 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| ||||| || ||| || || || || | || |||||||| || || | Sbjct 2185 TTGACATTCTCAATGGTGTCAGAAGCCTCCACCTCAAGTGTGATCGTCTTTCCAGTGAGG 2244 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || ||||||||| Sbjct 2245 GTCTTAACGAAGATCTGCATT 2265 >seq11380 Length=6731 Score = 120 bits (132), Expect = 6e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || ||||| || || || || |||||||| || || |||||||| |||||||||||| Sbjct 2494 TTACCGGCAAAAATGAGCCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATCTTT 2553 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||| || ||||| || || || ||| ||||| | || || ||||| |||||| Sbjct 2554 GCCTTTACGTTCTCAATGGTGTCCGAAGCTTCGACTTCTAGGGTGATGGTCTTTCCTGTC 2613 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | |||||| || || ||||||||| Sbjct 2614 AGCGTCTTCACGAAGATCTGCATT 2637 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || ||||| |||| ||| |||||||| || ||||| || || ||||| ||||||||| Sbjct 5070 CCGGCGAAGATAAGTCGTTGCTGATCTGGTGGAATTCCCTCTTTGTCTTGGATCTTTGCT 5129 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| || || || || || ||||| | || |||||||| || |||||| Sbjct 5130 TTGACATTTTCGATTGTGTCTGAAGCCTCCACTTCGAGTGTGATCGTCTTTCCGGTCAAC 5189 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || ||||||||| Sbjct 5190 GTCTTCACGAAAATCTGCATT 5210 Score = 116 bits (128), Expect = 7e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || || | || |||||||| || || |||||||| || || |||||| Sbjct 2858 TTACCAGCAAATATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGGATCTTT 2917 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| ||||| || || ||||| || ||| |||||||| || || ||||| || ||| Sbjct 2918 GCTTTGACATTCTCGATGGTATCCGAAGCTTCGACTTCCAAGGTGATGGTCTTCCCAGTC 2977 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| || || ||||||||| Sbjct 2978 AGTGTCTTGACGAAGATCTGCATT 3001 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || | || || || || || ||||| |||||||| || ||||| Sbjct 4694 TTACCAGCAAAGATAAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCCTGGATCTTG 4753 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||||||| || ||||||||||| || || || |||| ||| || ||||| || ||| Sbjct 4754 GCTTTTACGTTCTCAATCGTATCGGAAGCCTCGACCTCCAGAGTGATGGTCTTTCCAGTC 4813 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| || || || |||||| Sbjct 4814 AGGGTCTTCACGAAGATTTGCATT 4837 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| || | || |||||||| || || ||||||||||| || ||||| || Sbjct 3966 CCAGCAAAGATAAGGCGCTGCTGATCTGGTGGGATCCCTTCCTTATCCTGGATCTTAGCC 4025 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || ||||| || || || || ||||||| || || ||||| || |||| Sbjct 4026 TTGACGTTCTCAATAGTGTCCGAAGCCTCGACTTCCAGGGTGATGGTCTTTCCGGTCAGG 4085 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || ||||||||| Sbjct 4086 GTCTTCACGAAGATCTGCATT 4106 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || | || |||||||| || || ||||||||||| || ||||| Sbjct 4329 TTACCAGCAAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTATCCTGGATCTTA 4388 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || || || ||||| || || ||||||| || || ||||| || ||| Sbjct 4389 GCCTTGACGTTCTCGATAGTATCTGAAGCCTCGACTTCCAGGGTGATGGTCTTTCCAGTC 4448 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | || || || || ||||||||| Sbjct 4449 AGAGTTTTCACGAAGATCTGCATT 4472 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || |||| ||| ||||| || || ||||| || || |||||||| || Sbjct 5768 TTACCAGCAAAAATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTTC 5827 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || |||||||||||||| ||||| | ||| || || | || ||||| || || || Sbjct 5828 GCCTTTACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGTA 5887 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || || || || |||||||| Sbjct 5888 AGTGTTTTCACGAAGATCTGCAT 5910 >seq21247 Length=2906 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| |||| ||| ||||| || || ||||| || || |||||||| || Sbjct 2288 TTACCAGCAAAGATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTTC 2229 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || |||||||||||||||||||| | ||| || || | || ||||| || || || Sbjct 2228 GCCTTTACATTTTCAATCGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGTA 2169 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || || || || |||||||| Sbjct 2168 AGTGTTTTCACGAAGATCTGCAT 2146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980946862743559