Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq7012 104 2e-17 seq20539 102 8e-17 seq11380 91.5 1e-13 >seq7012 Length=10378 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 133465 TGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCC 133523 ||||||| ||||| || ||||| || || || | | | |||||||||||||| || Sbjct 4483 TGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCA-TCCTCGAGCTGCTTTCCA 4425 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||| |||||||| || || ||||| || |||||||| |||||| || Sbjct 4424 GCGAAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTAGCCTGC 4365 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | |||||| | || ||| || |||| |||| || || || || ||||| Sbjct 4364 ACATTCTCGATCGTGTCCGAGGCCTCAACCTCGAGCGTGATTGTCTTCCCCGTGAGAGTC 4305 Query 133644 TTTACGAAAATCTGCATGGCT 133664 || ||||| | |||||| || Sbjct 4304 TTCACGAAGACTTGCATGACT 4284 >seq20539 Length=3094 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| |||||||| || | |||| ||| | |||||||||||||| || Sbjct 189 GTGGACTCCTTCTGGATATTGTAGTCTGATAGCGTGCGACCA-TCCTCGAGCTGCTTTCC 247 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | | |||||| ||||||||||| ||||||||||| |||||| ||| Sbjct 248 GGCAAAGATCAATCTCTGCTGATCGGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCCTT 307 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | ||||| | | ||| || || | |||| || || || || || || Sbjct 308 CACGTTCTCGATTGTGTCTGACGCCTCGACCTCTAACGTGATCGTCTTCCCAGTAAGGGT 367 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 368 CTTCACAAAGATCTGCAT 385 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | || || |||||||||||||||||||| ||||||||||| |||||| | Sbjct 551 CCTGCGAAGATTAGTCGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTCGCC 610 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | ||||| ||||| | || ||| || || | |||| || || || || || Sbjct 611 TTAACATTCTCAATGGTGTCAGAGGCCTCGACCTCAAGCGTGATAGTCTTCCCAGTGAGG 670 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || || |||||||| Sbjct 671 GTCTTGACAAAGATCTGCAT 690 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 ||||| | || || ||||||||||| || || || ||||||||||| |||| || || Sbjct 1445 CCCGCAAAGATCAGTCGCTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTGGATC-TTGGC 1503 Query 133581 TTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 || | | | ||| | ||||||| | ||| || |||| |||| |||||||| || || Sbjct 1504 TTTAACATTCTCGATAGTGTCGGAAGCCTCTACCTCGAGTGTGATAGTTTTGCCAGTAAG 1563 Query 133640 AGTTTTTACGAAAATCTGCAT 133660 || || || ||||||||||| Sbjct 1564 CGTCTTGACAAAAATCTGCAT 1584 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| |||| | ||||||||||| || || || ||||||||||| |||||| | Sbjct 2125 CCTGCGAAAATCAATCGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCC 2184 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | ||||| ||||| | | |||||| || | |||| || || || || || Sbjct 2185 TTGACATTCTCAATGGTGTCAGAAGCCTCCACCTCAAGTGTGATCGTCTTTCCAGTGAGG 2244 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| Sbjct 2245 GTCTTAACGAAGATCTGCAT 2264 >seq11380 Length=6731 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 ||||||||| |||||| || || ||||||||||||||||| |||||| ||| | | Sbjct 2504 AAATGAGCCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGT 2563 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 ||||| ||||| | | || || || | ||||| ||| || || ||||| || || | Sbjct 2564 TCTCAATGGTGTCCGAAGCTTCGACTTCTAGGGTGATGGTCTTTCCTGTCAGCGTCTTCA 2623 Query 133648 CGAAAATCTGCAT 133660 |||| |||||||| Sbjct 2624 CGAAGATCTGCAT 2636 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 133518 TTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTT 133577 || || ||| | || |||| ||||||||||||||| || ||||||||||| |||||| Sbjct 2127 TTACCGGCGAAGATAAGCCTCTGCTGGTCGGGAGGAATACCTTCCTTGTCCTGGATCTTA 2186 Query 133578 TGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTC 133637 ||| | | || | || || | | ||| || || | ||||| ||| || |||||| Sbjct 2187 GCCTTCACGTTTTCGATGGTATCAGAAGCCTCGACTTCAAGGGTGATGGTCTTTCCGGTC 2246 Query 133638 AGAGTTTTTACGAAAATCTGCAT 133660 | || || |||||||||||||| Sbjct 2247 AAGGTCTTCACGAAAATCTGCAT 2269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || | || || |||||||| || || ||||| |||||||| || |||||| Sbjct 4328 CTTACCAGCAAAGATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTATCCTGGATCTT 4387 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | ||| | || || | | ||| || || | ||||| ||| || || || Sbjct 4388 AGCCTTGACGTTCTCGATAGTATCTGAAGCCTCGACTTCCAGGGTGATGGTCTTTCCAGT 4447 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||||||||| ||||| |||||||| Sbjct 4448 CAGAGTTTTCACGAAGATCTGCAT 4471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482997921612440