Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2989 104 6e-17 seq20539 91.5 3e-13 seq11380 86.0 1e-11 >seq2989 Length=17586 Score = 104 bits (114), Expect = 6e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || ||||| || |||||||||||||| ||| ||| || || |||| || |||||| Sbjct 16159 ACTGGAAAGACTATCACTTTGGAAGTCGAAGCTTCGGATACCATCGAGAACGTCAAAGCA 16100 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || ||| || || || ||||| || || || || | ||||||||||| |||| Sbjct 16099 AA-GATCCAGGACAAGGAAGGGATCCCACCAGATCAGCAGCGTCTTATCTTCGCTAGAAA 16041 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||| | |||||||| | || | | ||||||||| |||| |||||||| ||||| || Sbjct 16040 GCAGCTAGAAGATGGTTGCACCCTCTCGGATTACAACATCCAAAAAGAGTCCACTCTCCA 15981 Query 206373 CCTTGTTTTGAGACTTCGA 206391 ||||| | |||| ||| Sbjct 15980 TCTTGTGCTCCGACTCCGA 15962 >seq20539 Length=3094 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || |||||||| || || || || || ||| Sbjct 382 CAGATCTTTGTGAAGACCCTTACTGGGAAGACGATCACGTTAGAGGTCGAGGCGTCAGAC 323 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| ||||| ||||| || |||||||| || || || Sbjct 322 ACAATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGATCAGCAG 263 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| |||||||||||| | || ||||| | || | | || ||||| || Sbjct 262 AGATTGATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGCACGCTATCAGACTACAATATC 203 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| ||||| || || ||| | | ||||| Sbjct 202 CAGAAGGAGTCCACTCTCCATCTGGTTCTTCGTCTTCG 165 >seq11380 Length=6731 Score = 86.0 bits (94), Expect = 1e-11 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || ||||| |||||||| | |||||||| ||| |||||| ||||| Sbjct 5194 AAGACGTTGACCGGAAAGACGATCACACTCGAAGTGGAGGCTTCAGACACAATCGAAAAT 5135 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || |||||||| ||| ||||| ||||| |||||| || || ||| |||||||||| Sbjct 5134 GTCAAAGCAAA-GATCCAAGACAAAGAGGGAATTCCACCAGATCAGCAACGACTTATCTT 5076 Query 206304 CGCCGG 206309 |||||| Sbjct 5075 CGCCGG 5070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180761142169501