Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq11380 86.0 6e-12 seq21247 82.4 7e-11 seq2989 82.4 7e-11 >seq11380 Length=6731 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || |||||| | || || |||||| | || |||||| ||||||| | || || ||||| Sbjct 5914 CAGCATGCAGATCTTCGTGAAAACACTTACTGGAAAAACGATCACCCTTGAGGTGGAAGC 5855 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||||| || || | ||||| |||||| || |||||||| || || ||||| Sbjct 5854 CTCGGATACAATTGAAAATGTAAAGGCGAAAATTCAAGACAAAGAGGGAATCCCACCCGA 5795 Query 25291 TCAGCAAAGACTCATTT 25307 ||||||| |||| |||| Sbjct 5794 TCAGCAACGACTTATTT 5778 >seq21247 Length=2906 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || |||||| | || || |||||| | || |||||| ||||||| | || || ||||| Sbjct 2142 CAGCATGCAGATCTTCGTGAAAACACTTACTGGAAAAACGATCACCCTTGAGGTGGAAGC 2201 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||||| || || | ||||| |||||| || |||||||| || || ||||| Sbjct 2202 CTCGGATACGATTGAAAATGTAAAGGCGAAAATTCAAGACAAAGAGGGAATCCCACCCGA 2261 Query 25291 TCAGCAAAGACTCAT 25305 ||||||| |||| || Sbjct 2262 TCAGCAACGACTTAT 2276 >seq2989 Length=17586 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | || || || | ||||| | ||||||| ||| Sbjct 15955 ATGCAGATCTTCGTGAAGACGCTGACAGGGAAGACCATCACCCTTGAAGTCGGAGCTTCG 15896 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | ||||| || || || ||||| ||||| || | |||||| Sbjct 15895 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTGCAGATCAG 15836 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || || | || ||||||||||||||| || | | | | | | ||| |||||| Sbjct 15835 CAGAGGCTTATATTCGCCGGCAAACAACTCGAGGACGGTCGTACTCTTTCCGACTACAAT 15776 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || || ||||||||||| | || || ||| Sbjct 15775 ATCCAGAAAGAATCCACACTCCACTTGGTG 15746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444705048109920