Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq13364 170 3e-36 seq50540 167 3e-35 seq1167 158 2e-32 seq44077 154 2e-31 seq50548 149 9e-30 seq47866 147 3e-29 seq56617 140 5e-27 seq16030 136 6e-26 seq7654 125 1e-22 seq3337 125 1e-22 seq59704 113 6e-19 seq3391 107 3e-17 seq41851 104 3e-16 seq3767 86.0 9e-11 >seq13364 Length=5686 Score = 170 bits (188), Expect = 3e-36 Identities = 179/234 (76%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| ||||| ||||||||||||||| || | | | | || ||| | Sbjct 2186 ATCTACCGTGTGCTGAAGCAGGTGCACCCCGACACTGGAGTGTCGTCG------AAGGCG 2133 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||| || |||| ||||||| | |||||| || Sbjct 2132 ATGTCCATCATGAACTCGTTCGTGAACGACGTGTTCGAGCGCATCGCCGTCGAGGC--GT 2075 Query 725031 CGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| || |||| | |||||||||| |||||| | | ||||||||||||||||||| Sbjct 2074 CGCGACTCGCGCAGTACAACAAGCGCTCGACGATCTCCTCCCGCGAGATCCAGACCGCCG 2015 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||||||||| | | ||| ||||| |||| ||||||||| |||||||| |||| Sbjct 2014 TCCGCCTGATCCTCCCCGGAGAACTCGCCAAGCACGCCGTGTCCGAGGGAACCA 1961 >seq50540 Length=1801 Score = 167 bits (184), Expect = 3e-35 Identities = 173/225 (77%), Gaps = 10/225 (4%) Strand=Plus/Plus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 ||||| ||||||||||||||| |||| | | | || ||| | ||||| ||| Sbjct 2 GTGCTGAAGCAGGTGCACCCCGACACCGGAGTGTCGTCG------AAGGCGATGTCCATC 55 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC--CTGG 725037 ||||||||||| || |||||| || |||| ||||||| | |||||| ||||| || | Sbjct 56 ATGAACTCGTTCGTGAACGACGTGTTCGAGCGCATCGCCGTCGAGGC--GTCGCGACTCG 113 Query 725038 CGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGA 725097 ||| | |||||||||| |||||| | | ||||| |||||||||||||| ||||||| Sbjct 114 CGCAGTACAACAAGCGCTCGACGATCTCCTCCCGCGAAATCCAGACCGCCGTCCGCCTGA 173 Query 725098 TCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | | ||| ||||| |||| ||||||||| |||||||| |||| Sbjct 174 TCCTCCCCGGAGAACTCGCCAAGCACGCCGTGTCCGAGGGAACCA 218 >seq1167 Length=29528 Score = 158 bits (174), Expect = 2e-32 Identities = 174/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| ||||| ||||||||||||||| |||| || | || ||| | Sbjct 19336 ATCTACCGCGTGCTGAAGCAGGTGCACCCCGACACCGGTGTCTCGTCG------AAGGCG 19389 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||| | |||| ||||||| ||||| | Sbjct 19390 ATGTCCATCATGAACTCGTTCGTGAACGACGTCTTCGAGCGCATCGCTGTTGAGGCTTCT 19449 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | | |||||||||| |||||| | | ||||| |||||||||||||| Sbjct 19450 CGCCTTGCCCAGTACAACAAGCGCTCGACGATCTCCTCCCGCGAAATCCAGACCGCCGTC 19509 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||||||| | | ||| || || |||| ||||||||| ||||||||||||| Sbjct 19510 CGCCTGATCCTCCCCGGGGAGCTCGCCAAGCACGCCGTGTCCGAGGGCACCA 19561 Score = 109 bits (120), Expect = 8e-18 Identities = 144/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| ||||| ||||||||||||||| |||| || | || ||| | Sbjct 18774 ATCTACCGCGTGCTGAAGCAGGTGCACCCCGACACCGGTGTCTCGTCG------AAGGCG 18827 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||| | | || ||||||| ||||| | Sbjct 18828 ATGTCCATCATGAACTCGTTCGTGAACGACGTCTTTGAGCGCATCGCTGTTGAGGCTTCT 18887 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | | |||||| ||| |||||| | | ||||| |||||||||||||| Sbjct 18888 CGCCTTGCCCAGTACAACAAACGCTCGACGATCTCCTCCCGCGAAATCCAGACCGCCGTC 18947 Query 725091 CGCCTGATCATGCGCGGCGA 725110 ||||||||| | | ||| || Sbjct 18948 CGCCTGATCCTCCCCGGAGA 18967 >seq44077 Length=3746 Score = 154 bits (170), Expect = 2e-31 Identities = 173/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| ||||| ||||||||||||||| |||| || | | || ||| | Sbjct 318 ATCTACCGTGTGCTGAAGCAGGTGCACCCCGACACCGGTGTGTCGTCG------AAGGCG 371 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||||||||| || |||||| | |||| ||||||| ||||| | Sbjct 372 ATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAGCGCATCGCTGTTGAGGCTTCT 431 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | | |||||||||| || ||| | ||||| |||||||||||||| Sbjct 432 CGCCTTGCCCAGTACAACAAGCGCTCGACTATCTCATCCCGCGAAATCCAGACCGCCGTC 491 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||||| | | ||| || || |||| ||||||||| ||||||||||||| Sbjct 492 CGCCTGATACTCCCCGGAGAGCTCGCCAAGCACGCCGTGTCCGAGGGCACCA 543 >seq50548 Length=1800 Score = 149 bits (164), Expect = 9e-30 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| ||||| ||||||||||||||| |||| || | || ||| | Sbjct 1502 ATCTACCGTGTGCTGAAGCAGGTGCACCCCGACACCGGTGTCTCGTCG------AAGGCG 1449 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||| | | || ||||||| ||||| | Sbjct 1448 ATGTCCATCATGAACTCGTTCGTGAACGACGTCTTTGAGCGCATCGCTGTTGAGGCTTCT 1389 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | | |||||| ||| |||||| | | ||||| |||||||||||||| Sbjct 1388 CGCCTTGCCCAGTACAACAAACGCTCGACGATCTCCTCCCGCGAAATCCAGACCGCCGTC 1329 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||||||| | | ||| || || |||| ||||||||| ||||||||||||| Sbjct 1328 CGCCTGATCCTCCCCGGAGAGCTCGCCAAGCACGCCGTGTCCGAGGGCACCA 1277 >seq47866 Length=2187 Score = 147 bits (162), Expect = 3e-29 Identities = 174/234 (74%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| ||||| ||||||||||||||| |||| || | || ||| | Sbjct 304 ATCTACCGCGTGCTGAAGCAGGTGCACCCCGACACCGGTGTCTCGTCG------AAGGCG 357 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| || |||||||| || || |||||| | |||| ||||||| ||||| || Sbjct 358 ATGTCCATAATGAACTCTTTCGTGAACGACGTCTTCGAGCGCATCGCTGTTGAGGC--GT 415 Query 725031 CGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| || |||| | |||||||||| |||||| | | ||||| ||||||||||||| Sbjct 416 CGCGACTCGCGCAGTACAACAAGCGCTCGACGATCTCCTCCCGCGAAATCCAGACCGCCG 475 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||||||||| | | ||| || || |||| ||||||||| ||||||||||||| Sbjct 476 TCCGCCTGATCCTCCCCGGGGAGCTCGCCAAGCACGCCGTGTCCGAGGGCACCA 529 >seq56617 Length=1366 Score = 140 bits (154), Expect = 5e-27 Identities = 170/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| ||||| ||||||||||||||| |||| || | || ||| | Sbjct 258 ATCTACCGTGTGCTGAAGCAGGTGCACCCCGACACCGGTGTCTCGTCG------AAGGCG 311 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||| | | || ||||||| ||||| | Sbjct 312 ATGTCCATCATGAACTCGTTCGTGAACGACGTCTTTGAGCGCATCGCTGTTGAGGCTTCT 371 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | | ||||||||| |||||| | | ||||| |||||||||||||| Sbjct 372 CGCCTTGCCCAGTATAACAAGCGCTCGACGATCTCCTCCCGCGAAATCCAGACCGCCGTC 431 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||||||| | | ||| || || |||| ||||| || ||||||||||||| Sbjct 432 CGCCTGATCCTCCCCGGAGAGCTCGCCAAGCACGATGTGTCCGAGGGCACCA 483 >seq16030 Length=4730 Score = 136 bits (150), Expect = 6e-26 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| ||||||||||||||||| || |||| || | || ||| | Sbjct 4442 ATCTACCGTGTGCTCAAGCAGGTGCATCCGGACACCGGTGTCTCGTCG------AAGGCG 4389 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||| | |||| ||||||| | ||||| | Sbjct 4388 ATGTCCATCATGAACTCGTTCGTGAACGACGTCTTCGAGCGCATCGCCGTTGAGGCTTCT 4329 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | | ||||||||| ||||||| | | ||||| ||||||||||| || Sbjct 4328 CGCCTTGCCCAGTACAACAAGCGATCCACGATCTCCTCTCGCGAAATCCAGACCGCTGTC 4269 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| ||| | | ||| ||||| |||| |||||| || || ||||| || Sbjct 4268 CGCCTCATCCTTCCCGGAGAACTCGCCAAGCACGCAGTGTCTGAGGGAAC 4219 >seq7654 Length=11083 Score = 125 bits (138), Expect = 1e-22 Identities = 131/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||| | |||| ||||||| | ||||| | Sbjct 2353 ATGTCCATCATGAACTCGTTCGTGAACGACGTCTTCGAGCGCATCGCCGTTGAGGCTTCT 2412 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | | ||||||||| ||||||| | | ||||| ||||||||||| || Sbjct 2413 CGCCTTGCCCAGTACAACAAGCGATCCACGATCTCCTCTCGCGAAATCCAGACCGCTGTC 2472 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| ||| | | || ||||| |||| |||||| || || ||||| |||| Sbjct 2473 CGCCTCATCCTTCCTGGAGAACTCGCCAAGCACGCAGTGTCTGAGGGAACCA 2524 >seq3337 Length=44239 Score = 125 bits (138), Expect = 1e-22 Identities = 169/234 (72%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| ||||| ||||||||||||||| |||| || | || ||| | Sbjct 12975 ATCTACCGTGTGCTGAAGCAGGTGCACCCCGACACCGGTGTCTCGTCG------AAGGCG 12922 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||| | |||| ||||||| ||||| || Sbjct 12921 ATGTCCATCATGAACTCGTTCGTGAACGACGTCTTCGAGCGCATCGCTGTGGAGGC--GT 12864 Query 725031 CGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| || || | | ||||||||| |||||| | | ||||| ||||||||||| | Sbjct 12863 CGCGACTCGCCCAGTACAACAAGCGATCGACGATCTCCTCCCGCGAAATCCAGACCGCTG 12804 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||||||||| | | || || || |||| |||||| || || ||||| |||| Sbjct 12803 TCCGCCTGATCCTTCCTGGAGAGCTCGCCAAGCACGCAGTGTCTGAGGGAACCA 12750 >seq59704 Length=1251 Score = 113 bits (124), Expect = 6e-19 Identities = 128/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||| | | || ||||||| ||||| | Sbjct 1250 ATGTCCATCATGAACTCGTTCGTGAACGACGTCTTTGAGCGCATCGCTGTTGAGGCTTCT 1191 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | | ||||||||| ||||||| | | ||||| || |||||||| || Sbjct 1190 CGCCTTGCCCAGTACAACAAGCGGTCCACGATCTCCTCTCGCGAAATTCAGACCGCTGTC 1131 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||| | | ||| ||||| |||| |||||| || || ||||| |||| Sbjct 1130 CGTCTCATCCTTCCCGGAGAACTCGCCAAGCACGCAGTGTCTGAGGGAACCA 1079 >seq3391 Length=16928 Score = 107 bits (118), Expect = 3e-17 Identities = 82/97 (85%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 725046 AACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGC 725105 ||||||||| ||||||| | | |||||||||||||||||||| ||||||||| | | | Sbjct 16928 AACAAGCGCTCCACGATCTCCTCCCGCGAGATCCAGACCGCCGTCCGCCTGATCCTCCCC 16869 Query 725106 GGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || |||| ||||||||| ||||||||||||| Sbjct 16868 GGAGAGCTCGCCAAGCACGCCGTGTCCGAGGGCACCA 16832 >seq41851 Length=13287 Score = 104 bits (114), Expect = 3e-16 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || || ||||| || |||||| || ||| || ||||| || | Sbjct 808 ATCTACCGTGTCCTGAAGCAAGTCCACCCCGATAC---TGGCGTTTCGTCCAA--AG-CT 861 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| || ||||||||||| ||||||||| | |||| || || | | || ||| | Sbjct 862 ATGTCTATTATGAACTCGTTCGTCAACGACGTATTCGAGCGTATTGCTGCTGAAGCCTCT 921 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||||| | ||||||| | || || |||| || |||||||| || || Sbjct 922 CGTCTGGCGCAGTACAACAAGAGGTCGACTATTTCATCGCGAGAAATCCAGACTGCTGTT 981 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || |||||| ||| ||| || |||||| |||||| ||||| || ||||||| Sbjct 982 CGACTGATCCTGCCCGGAGAGTTGGCCAAGCACGCTGTCTCTGAAGGCACCA 1033 >seq3767 Length=16979 Score = 86.0 bits (94), Expect = 9e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 725046 AACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGC 725105 ||||| ||| || ||| | | |||||||||||||||||||| ||||||||| | | | Sbjct 3965 AACAAACGCTCGACCATCTCCTCCCGCGAGATCCAGACCGCCGTTCGCCTGATCCTCCCC 4024 Query 725106 GGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||||| || | |||||||||||| || ||||| Sbjct 4025 GGAGAACTCGCTAAGCACGCCGTCTCGGAAGGCAC 4059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7171061403924922