Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq20539 113 5e-20 seq2989 86.0 6e-12 seq11380 82.4 8e-11 >seq20539 Length=3094 Score = 113 bits (124), Expect = 5e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||| ||||||||||| || || || |||||||| ||||| ||||| Sbjct 2456 TTACCAGCAAAAATCAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTG 2515 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| || | ||||| |||| ||| || ||||| ||||| || || || || Sbjct 2516 GCCTTGACATTCTCGATGGTGTCAGACGCTTCGACCTCGAGGGTAATCGTCTTTCCAGTA 2575 Query 134691 AAAGTTTTAACGAAAATTTGCATTTTG 134717 | ||||||||||||||||||||| || Sbjct 2576 AGCGTTTTAACGAAAATTTGCATTGTG 2602 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 |||||||| | || || | || || || || ||||| ||||| || || |||||||| Sbjct 156 TTTCCTCCACGAAGACGAAGAACCAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCT 215 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||| || || |||||||| || || ||||| ||||| | |||||||||||| Sbjct 216 GATAGCGTGCGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCGGGA 275 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || ||||| || ||||| || || || || || | |||||| |||| || Sbjct 276 GGGATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATTGTGTCTGACGCCTCG 335 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || | || || || || || || | || || || || || |||||| Sbjct 336 ACCTCTAACGTGATCGTCTTCCCAGTAAGGGTCTTCACAAAGATCTGCATT 386 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || ||||| || |||||||| ||||| || || || || ||||| || ||||| || || Sbjct 1814 TTACCTGCGAAGATCAAACGTTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCTTA 1873 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| || | |||||| || | ||||| || || || |||||||||||||| Sbjct 1874 GCCTTGACATTCTCGATTGTGTCAGATGCCTCCACTTCAAGCGTGATGGTTTTACCGGTG 1933 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | || ||||| || ||||||||| Sbjct 1934 AGCGTCTTAACAAAGATTTGCATT 1957 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| |||| ||||||||||| || || ||||||||||| |||||||| || Sbjct 850 TTACCAGCAAAGATCAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGAATCTTG 909 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | |||||| |||| || || || ||||| || ||||| || || Sbjct 910 GCCTTCACATTTTCGATTGTGTCTGACGCCTCGACCTCCAGAGTGATCGTTTTCCCAGTG 969 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | || || || || || |||||| Sbjct 970 AGGGTCTTCACAAAGATCTGCATT 993 >seq2989 Length=17586 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||| ||| |||||| | ||| || || || ||||| || ||||| |||||||| || Sbjct 15955 TTCCTGCTCGGAGTCGGAGCACAAGATGGAGAGTGGACTCTTTTTGGATGTTGTAATCCG 16014 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | || || ||||| || | || || || | |||||||||||| || | Sbjct 16015 AGAGGGTGCAACCATCTTCTAGCTGCTTTCTAGCGAAGATAAGACGCTGCTGATCTGGTG 16074 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || || || ||| |||||| || | || || || | ||| | Sbjct 16075 GGATCCCTTCCTTGTCCTGGATCTTTGCTTTGACGTTCTCGATGGTATCCGAAGCTTCGA 16134 Query 134665 CGTCGAGAGTAATGGTTTTACCGGT 134689 | || | ||| || || || || || Sbjct 16135 CTTCCAAAGTGATAGTCTTTCCAGT 16159 >seq11380 Length=6731 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||| | || ||||||||||| || || || ||||| ||||||||||| Sbjct 5768 TTACCAGCAAAAATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTTC 5827 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | ||| || || | |||||| || || || || ||||| || || Sbjct 5828 GCCTTTACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGTA 5887 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | ||||| ||||| || ||||| Sbjct 5888 AGTGTTTTCACGAAGATCTGCAT 5910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504956296432120