Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2989 111 1e-19 seq11380 91.5 1e-13 seq21247 87.8 2e-12 seq20539 86.0 5e-12 >seq2989 Length=17586 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || |||||||| | | | || Sbjct 15955 ATGCAGATCTTCGTGAAGACGCTGACAGGGAAGACCATCACCCTTGAAGTCGGAGCTTCG 15896 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || ||||||||||| || || | ||||| Sbjct 15895 GACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTGCAGATCAG 15836 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | |||| ||||||||||||| | || ||| || || ||||||| ||||| Sbjct 15835 CAGAGGCTTATATTCGCCGGCAAACAACTCGAGGACGGTCGTACTCTTTCCGACTACAAT 15776 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || || || || || | || ||||| Sbjct 15775 ATCCAGAAAGAATCCACACTCCACTTGGT 15747 Score = 102 bits (112), Expect = 7e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 27011 GACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACA 27070 ||| || ||| |||| ||| | ||||| ||| | || || | || |||| |||||| Sbjct 16160 GACTGGAAAGACTATCACTTTGGAAGTCGAAGCTTCGGATACCATCGAGAACGTCAAAGC 16101 Query 27071 AAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAA 27130 ||| || || ||||| ||||| || ||||| ||||| |||||| | || | ||| | || Sbjct 16100 AAAGATCCAGGACAAGGAAGGGATCCCACCAGATCAGCAGCGTCTTATCTTCGCTAGAAA 16041 Query 27131 ACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184 || | ||||| ||| ||| | || ||||||||||| ||||| ||||| || Sbjct 16040 GCAGCTAGAAGATGGTTGCACCCTCTCGGATTACAACATCCAAAAAGAGTCCAC 15987 >seq11380 Length=6731 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || ||||| ||| | || Sbjct 2636 ATGCAGATCTTCGTGAAGACGCTGACAGGAAAGACCATCACCCTAGAAGTCGAAGCTTCG 2577 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || ||| ||||||||||| |||||||| ||||| ||||| Sbjct 2576 GACACCATTGAGAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATCCCACCAGATCAG 2517 Query 27108 CAG 27110 ||| Sbjct 2516 CAG 2514 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||| ||| | || || || |||||||| | || Sbjct 5209 ATGCAGATTTTCGTGAAGACGTTGACCGGAAAGACGATCACACTCGAAGTGGAGGCTTCA 5150 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| ||| || ||||||||||| || || ||||| ||||| Sbjct 5149 GACACAATCGAAAATGTCAAAGCAAAGATCCAAGACAAAGAGGGAATTCCACCAGATCAG 5090 Query 27108 CAGCGTTTAATATACGCCGG 27127 || || | || | |||||| Sbjct 5089 CAACGACTTATCTTCGCCGG 5070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| || || || || | || || ||||| |||||| | || Sbjct 5911 CATGCAGATCTTCGTGAAAACACTTACTGGAAAAACGATCACCCTTGAGGTGGAAGCCTC 5852 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || || ||||||||||||||||| || || ||||||||||| Sbjct 5851 GGATACAATTGAAAATGTAAAGGCGAAAATTCAAGACAAAGAGGGAATCCCACCCGATCA 5792 Query 27107 ACAGCG 27112 || || Sbjct 5791 GCAACG 5786 >seq21247 Length=2906 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| || || || || | || || ||||| |||||| | || Sbjct 2145 CATGCAGATCTTCGTGAAAACACTTACTGGAAAAACGATCACCCTTGAGGTGGAAGCCTC 2204 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || ||||||| | || || ||||||||||||||||| || || ||||||||||| Sbjct 2205 GGATACGATTGAAAATGTAAAGGCGAAAATTCAAGACAAAGAGGGAATCCCACCCGATCA 2264 Query 27107 ACAGCG 27112 || || Sbjct 2265 GCAACG 2270 >seq20539 Length=3094 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || || ||| | ||||| || || || ||| |||| Sbjct 2598 ATGCAAATTTTCGTTAAAACGCTTACTGGAAAGACGATTACCCTCGAGGTCGAAGCGTCT 2539 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| ||||| |||||||||||||| || || || ||||| Sbjct 2538 GACACCATCGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGAATTCCTCCTGATCAG 2479 Query 27108 CAGCG 27112 ||||| Sbjct 2478 CAGCG 2474 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || ||||| || | || || ||||||||||| | || Sbjct 1956 ATGCAAATCTTTGTTAAGACGCTCACCGGTAAAACCATCACGCTTGAAGTGGAGGCATCT 1897 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || |||||||| ||||| || ||||| || || Sbjct 1896 GACACAATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCTGACCAG 1837 Query 27108 CAGCGTTTAATATACGCCGGCAA 27130 || ||||| || | ||| || || Sbjct 1836 CAACGTTTGATCTTCGCAGGTAA 1814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434537949693120