Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2989 150 4e-31 seq7012 147 5e-30 seq20539 141 2e-28 seq11380 114 3e-20 seq49065 104 6e-17 seq21247 95.1 3e-14 >seq2989 Length=17586 Score = 150 bits (166), Expect = 4e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || |||| || ||||| ||||||||||| |||||||||| |||||||| | | || Sbjct 15963 CGGAGTCGGAGCACAAGATGGAGAGTGGACTCTTTTTGGATGTTGTAATCCGAGAGGGTG 16022 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||||||||||||||| | |||||||||||| || || || || || || || ||| Sbjct 16023 CAACCATCTTCTAGCTGCTTTCTAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCCCT 16082 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| ||||||||| || || |||||||| || || | ||| || || || Sbjct 16083 TCCTTGTCCTGGATCTTTGCTTTGACGTTCTCGATGGTATCCGAAGCTTCGACTTCCAAA 16142 Query 225673 GTGATCGTCTTGCCCGTC 225690 ||||| ||||| || ||| Sbjct 16143 GTGATAGTCTTTCCAGTC 16160 Score = 118 bits (130), Expect = 3e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | |||||| ||||||||||| |||| |||||| |||| | ||| Sbjct 15734 ACGAAGGCGAAGCACCAAGTGGAGTGTGGATTCTTTCTGGATATTGTAGTCGGAAAGAGT 15793 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || || || || || ||||| ||||| | || || || | |||||||| Sbjct 15794 ACGACCGTCCTCGAGTTGTTTGCCGGCGAATATAAGCCTCTGCTGATCTGCAGGAATACC 15853 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||| |||||||| ||| || || |||||||| || | | | || || | Sbjct 15854 TTCTTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCCGAAGCTCCGACTTCAAG 15913 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||| || |||| || || | ||| | |||||| Sbjct 15914 GGTGATGGTCTTCCCTGTCAGCGTCTTCACGAAGATCTGCATT 15956 >seq7012 Length=10378 Score = 147 bits (162), Expect = 5e-30 Identities = 158/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 225507 AAGGTGGAGAG-TGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 ||||||||| | |||| || || || | ||||| || | || ||| | ||||| || | Sbjct 4495 AAGGTGGAGGGATGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCATCCTCGA 4436 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||| ||||||||||| || || || || || || || ||||| ||||||||||||| Sbjct 4435 GCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGA 4376 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| || |||| ||||| ||||| |||| || || || | |||||| ||||| | Sbjct 4375 TCTTAGCCTGCACATTCTCGATCGTGTCCGAGGCCTCAACCTCGAGCGTGATTGTCTTCC 4316 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||| | ||| || | ||| |||||||| Sbjct 4315 CCGTGAGAGTCTTCACGAAGACTTGCAT 4288 >seq20539 Length=3094 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || ||||||||||| || || |||| |||||| || | | || Sbjct 164 ACGAAGACGAAGAACCAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGATAGCGT 223 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || || ||||| | || || || ||||| || || || Sbjct 224 GCGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGGATTCC 283 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||||||| |||||| ||||| |||||||| | || || ||||| Sbjct 284 TTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATTGTGTCTGACGCCTCGACCTCTAA 343 Query 225672 CGTGATCGTCTTGCCCGT 225689 |||||||||||| || || Sbjct 344 CGTGATCGTCTTCCCAGT 361 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || ||||| || |||||||| ||||| || ||||| |||||||| |||||||| || | Sbjct 1161 CCTGCGAAAATTAGTCGTTGCTGGTCAGGTGGAATTCCTTCCTTATCTTGGATTTTAGCC 1220 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| || |||||||| || | ||| || || | ||||||||||| || || | Sbjct 1221 TTGACATTCTCAATGGTGTCAGAAGCTTCGACTTCGAGAGTGATCGTCTTTCCAGTGAGG 1280 Query 225694 GTTTTTATGAACACTTGCATT 225714 ||||||| ||| | |||||| Sbjct 1281 GTTTTTACGAAGATCTGCATT 1301 Score = 93.3 bits (102), Expect = 1e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| ||||| || |||||||| || || ||||||||||| |||||||| | Sbjct 551 CCTGCGAAGATTAGTCGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTCGCC 610 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||| || |||||||| |||| || || || | |||||| ||||| || || Sbjct 611 TTAACATTCTCAATGGTGTCAGAGGCCTCGACCTCAAGCGTGATAGTCTTCCCAGT 666 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || ||||| || | ||| || ||||| || ||||| |||||||||||||||||||| | Sbjct 2125 CCTGCGAAAATCAATCGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCC 2184 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| || |||||||| || | ||||| || | ||||||||||| || || | Sbjct 2185 TTGACATTCTCAATGGTGTCAGAAGCCTCCACCTCAAGTGTGATCGTCTTTCCAGTGAGG 2244 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | ||| | |||||| Sbjct 2245 GTCTTAACGAAGATCTGCATT 2265 Score = 91.5 bits (100), Expect = 4e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| || || || || || || || || ||||| ||||| ||||||||||| || Sbjct 2455 CTTACCAGCAAAAATCAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTT 2514 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| ||||||||||| || | ||| || || | || |||||||| || || Sbjct 2515 GGCCTTGACATTCTCGATGGTGTCAGACGCTTCGACCTCGAGGGTAATCGTCTTTCCAGT 2574 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 | ||||| | ||| | ||||||| Sbjct 2575 AAGCGTTTTAACGAAAATTTGCATT 2599 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| | ||||| ||||| || || || |||||||||||||||||||| Sbjct 1814 TTACCTGCGAAGATCAAACGTTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCTTA 1873 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| ||||| ||||| || | ||||| || | |||||| || || || || Sbjct 1874 GCCTTGACATTCTCGATTGTGTCAGATGCCTCCACTTCAAGCGTGATGGTTTTACCGGTG 1933 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 | || || | || | ||||||| Sbjct 1934 AGCGTCTTAACAAAGATTTGCATT 1957 >seq11380 Length=6731 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || ||||||||||||||||| || || || ||||| || || ||||||||||||||| Sbjct 5070 CCGGCGAAGATAAGTCGTTGCTGATCTGGTGGAATTCCCTCTTTGTCTTGGATCTTTGCT 5129 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| |||||| |||||||| | ||||| || | ||||||||||| || ||||| Sbjct 5130 TTGACATTTTCGATTGTGTCTGAAGCCTCCACTTCGAGTGTGATCGTCTTTCCGGTCAAC 5189 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | ||| | |||||| Sbjct 5190 GTCTTCACGAAAATCTGCATT 5210 Score = 107 bits (118), Expect = 5e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || ||||||||||| | || |||||||| ||||||||||||||||| |||||||| Sbjct 2127 TTACCGGCGAAGATAAGCCTCTGCTGGTCGGGAGGAATACCTTCCTTGTCCTGGATCTTA 2186 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 |||||| ||||||||| || || | || || || | ||||| ||||| || ||| Sbjct 2187 GCCTTCACGTTTTCGATGGTATCAGAAGCCTCGACTTCAAGGGTGATGGTCTTTCCGGTC 2246 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 || || || | ||| | |||||| Sbjct 2247 AAGGTCTTCACGAAAATCTGCATT 2270 Score = 91.5 bits (100), Expect = 4e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| || ||||| || || || || || || || ||||||||||| |||||||| Sbjct 2857 CTTACCAGCAAATATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGGATCTT 2916 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 | || ||| |||||||| || || | ||| || || || ||||| ||||| || || Sbjct 2917 TGCTTTGACATTCTCGATGGTATCCGAAGCTTCGACTTCCAAGGTGATGGTCTTCCCAGT 2976 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 || || || | ||| | |||||| Sbjct 2977 CAGTGTCTTGACGAAGATCTGCATT 3001 Score = 91.5 bits (100), Expect = 4e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || || ||||| || || ||||| || || || ||||||||||| ||||| || Sbjct 5402 CTTACCGGCAAAAATAAGGCGCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGGATTTT 5461 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || |||||||||||||||| ||| || || | ||||| ||||| || || Sbjct 5462 GGCCTTTACGTTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATTGTCTTTCCAGT 5521 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 || || || | ||| | |||||| Sbjct 5522 CAGGGTCTTGACGAAGATCTGCATT 5546 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| || ||||||||||| || ||||| || || || || |||||||| || || Sbjct 5767 CTTACCAGCAAAAATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTT 5826 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| ||| || || || |||| |||||| || | |||||||| || || || Sbjct 5827 CGCCTTTACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGT 5886 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | ||||| | ||| | ||||| Sbjct 5887 AAGTGTTTTCACGAAGATCTGCAT 5910 >seq49065 Length=1973 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||||||||| || || || || || || || || || |||||||| |||||||| | Sbjct 1702 CCAGCGAAGATGAGACGCTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCC 1761 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| |||||| ||||| |||| || || || | |||||| ||||| ||||| | | Sbjct 1762 TTCACATTTTCGATCGTGTCCGAGGCCTCAACCTCGAGCGTGATTGTCTTCCCCGTGAGA 1821 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | |||||| Sbjct 1822 GTCTTCACGAAGATTTGCAT 1841 >seq21247 Length=2906 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || |||||||| || || ||||| || || || || |||||||| ||||| || Sbjct 2644 CTTACCGGCAAAGATAAGGCGCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATTTT 2585 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||| |||||||||||||||| ||| || || | ||||| ||||| || || Sbjct 2584 GGCCTTCACGTTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTTCCAGT 2525 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 || || || | ||| | |||||| Sbjct 2524 CAGGGTCTTGACGAAGATCTGCATT 2500 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| |||||||||||||| || ||||| || || || || |||||||| || || Sbjct 2289 CTTACCAGCAAAGATAAGTCGTTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGAATTTT 2230 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| ||| || || || |||| |||||| || | |||||||| || || || Sbjct 2229 CGCCTTTACATTTTCAATCGTATCCGAGGCTTCCACCTCAAGGGTGATCGTTTTTCCAGT 2170 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | ||||| | ||| | ||||| Sbjct 2169 AAGTGTTTTCACGAAGATCTGCAT 2146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191461938886814