Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2989 129 1e-24 seq20539 107 4e-18 seq7012 100 7e-16 seq11380 98.7 2e-15 >seq2989 Length=17586 Score = 129 bits (142), Expect = 1e-24 Identities = 148/197 (75%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| |||||||| ||||| ||||||||||||||||||||||| | | || | Sbjct 15965 GAGTCGGAGCACAAGATGGAGAGTGGACTCTTTTTGGATGTTGTAATCCGAGAGGGTGCA 16024 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||||||||| ||||| | ||||||||||| | |||||| || | | ||| ||| Sbjct 16025 ACCATCTTCTAGCTGCTTT--CTAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCCCT 16082 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || ||| |||||| |||| | | | || ||| || ||||| | | Sbjct 16083 TCCTTGTCCTGGATCTTTGCTTTGACGTTCTCGATGGTATCCGAAGCTTCGACTTCCAAA 16142 Query 152064 GTAATAGTTTTGCCCGT 152080 || ||||| || || || Sbjct 16143 GTGATAGTCTTTCCAGT 16159 Score = 116 bits (128), Expect = 9e-21 Identities = 154/210 (73%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || ||||| ||||| ||||| |||| | ||| | || || || | Sbjct 15749 CAAG-TGGAGTGTGGATTCTTTCTGGATATTGTAGTCGGAAAGAGTACGACCGTCCTCGA 15807 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| |||||||| |||||||||||||| || || | || ||||| || || || | Sbjct 15808 GTTGTTTGCCGGCGAATATAAGCCTCTGCTGATCTGCAGGAATACCTTCTTTGTCCTGGA 15867 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAA-CTCTCTACTTCAAGAGTAATAGTTTTG 152075 | || || || |||| | | |||| ||| ||| | |||||||| || || || || Sbjct 15868 TCTTGGCCTTTACGTTCTCAATGGTGTCCGAAGCTC-CGACTTCAAGGGTGATGGTCTTC 15926 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || ||||||||||||| ||||||| Sbjct 15927 CCTGTCAGCGTCTTCACGAAGATCTGCATT 15956 >seq20539 Length=3094 Score = 107 bits (118), Expect = 4e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| ||||| ||||| || ||||| ||||| || | || || | ||||| Sbjct 174 AGAACCAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGATAGCGTGCGACCATCC 233 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||| ||||| | |||||||| || | | |||||||||||| | Sbjct 234 TCGAGCTGCTTT--CCGGCAAAGATCAATCTCTGCTGATCGGGAGGGATTCCTTCCTTGT 291 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| || || || || |||| | ||||||| ||| || || | || || | Sbjct 292 CTTGGATCTTGGCCTTCACGTTCTCGATTGTGTCTGACGCCTCGACCTCTAACGTGATCG 351 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || || |||||||| |||| ||||||| Sbjct 352 TCTTCCCAGTAAGGGTCTTCACAAAGATCTGCATT 386 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || |||||||| || | ||||||||| | | |||||||||||| || || || || Sbjct 551 CCTGCGAAGATTAGTCGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTCGCC 610 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || ||| |||| | | |||| || ||| || ||||| || ||||| || || ||||| Sbjct 611 TTAACATTCTCAATGGTGTCAGAGGCCTCGACCTCAAGCGTGATAGTCTTCCCAGTGAGG 670 Query 152085 GTCTTCACGAAGACCTGCATT 152105 ||||| || |||| ||||||| Sbjct 671 GTCTTGACAAAGATCTGCATT 691 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || ||||| || || | |||||||| | | ||||||||||| ||||| ||||| Sbjct 1161 CCTGCGAAAATTAGTCGTTGCTGGTCAGGTGGAATTCCTTCCTTATCTTGGATTTTAGCC 1220 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 |||||| |||| | | |||| ||| || ||||| ||||| || || || || ||||| Sbjct 1221 TTGACATTCTCAATGGTGTCAGAAGCTTCGACTTCGAGAGTGATCGTCTTTCCAGTGAGG 1280 Query 152085 GTCTTCACGAAGACCTGCATT 152105 || || ||||||| ||||||| Sbjct 1281 GTTTTTACGAAGATCTGCATT 1301 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || || ||||| || | ||||||||| | | ||||||||||| ||||| || || | Sbjct 1445 CCCGCAAAGATCAGTCGCTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCT 1504 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || ||| |||| | |||| ||| |||||| || || || ||||||||||| || || Sbjct 1505 TTAACATTCTCGATAGTGTCGGAAGCCTCTACCTCGAGTGTGATAGTTTTGCCAGTAAGC 1564 Query 152085 GTCTTCACGAAGACCTGCATT 152105 ||||| || || | ||||||| Sbjct 1565 GTCTTGACAAAAATCTGCATT 1585 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || ||||| || | | ||||||||| | | ||||||||||| ||||| || || Sbjct 2125 CCTGCGAAAATCAATCGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCC 2184 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 |||||| |||| | | |||| ||| ||| || ||||| || || || || || ||||| Sbjct 2185 TTGACATTCTCAATGGTGTCAGAAGCCTCCACCTCAAGTGTGATCGTCTTTCCAGTGAGG 2244 Query 152085 GTCTTCACGAAGACCTGCATT 152105 ||||| ||||||| ||||||| Sbjct 2245 GTCTTAACGAAGATCTGCATT 2265 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || |||||||| | | |||||||| | | |||||||||||| ||||| || || Sbjct 1814 TTACCTGCGAAGATCAAACGTTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCTTA 1873 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| |||| | |||| || ||| |||||||| || || ||||| || ||| Sbjct 1874 GCCTTGACATTCTCGATTGTGTCAGATGCCTCCACTTCAAGCGTGATGGTTTTACCGGTG 1933 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || |||| |||||| Sbjct 1934 AGCGTCTTAACAAAGATTTGCATT 1957 >seq7012 Length=10378 Score = 100 bits (110), Expect = 7e-16 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 151911 GACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGG 151968 ||||| || || |||||||| || | | ||| | ||||| || || ||||| || | Sbjct 4481 GACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCATCCTCGAGCTGCTTT--CCAG 4424 Query 151969 CGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGA 152028 ||||||| || | |||||| || | | ||| || ||||| ||||| || || | | Sbjct 4423 CGAAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTAGCCTGCA 4364 Query 152029 CAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCT 152088 || |||| | |||| || ||| || || || || || || || ||||||||||||| Sbjct 4363 CATTCTCGATCGTGTCCGAGGCCTCAACCTCGAGCGTGATTGTCTTCCCCGTGAGAGTCT 4304 Query 152089 TCACGAAGACCTGCAT 152104 |||||||||| ||||| Sbjct 4303 TCACGAAGACTTGCAT 4288 >seq11380 Length=6731 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||| || || ||||||||||| || | | ||| |||||||| |||||||| ||| Sbjct 2494 TTACCGGCAAAAATGAGCCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATCTTT 2553 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || || |||| | | |||| ||| || ||||| || || || || || || || Sbjct 2554 GCCTTTACGTTCTCAATGGTGTCCGAAGCTTCGACTTCTAGGGTGATGGTCTTTCCTGTC 2613 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 || ||||||||||||| ||||||| Sbjct 2614 AGCGTCTTCACGAAGATCTGCATT 2637 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || |||||||||||||||||||||||||| | | || |||||||| || || || || Sbjct 2127 TTACCGGCGAAGATAAGCCTCTGCTGGTCGGGAGGAATACCTTCCTTGTCCTGGATCTTA 2186 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || || | || | | | || ||| ||| |||||||| || || || || || || Sbjct 2187 GCCTTCACGTTTTCGATGGTATCAGAAGCCTCGACTTCAAGGGTGATGGTCTTTCCGGTC 2246 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 | ||||||||||| | ||||||| Sbjct 2247 AAGGTCTTCACGAAAATCTGCATT 2270 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 |||||||||||||| | ||||| || | | ||||| || || ||||| || ||| | Sbjct 5070 CCGGCGAAGATAAGTCGTTGCTGATCTGGTGGAATTCCCTCTTTGTCTTGGATCTTTGCT 5129 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 |||||| | || | |||||||| ||| ||||| || || || || || || || | Sbjct 5130 TTGACATTTTCGATTGTGTCTGAAGCCTCCACTTCGAGTGTGATCGTCTTTCCGGTCAAC 5189 Query 152085 GTCTTCACGAAGACCTGCATT 152105 ||||||||||| | ||||||| Sbjct 5190 GTCTTCACGAAAATCTGCATT 5210 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || || |||||||| | |||||| || | | ||| |||||||| || || || || Sbjct 3966 CCAGCAAAGATAAGGCGCTGCTGATCTGGTGGGATCCCTTCCTTATCCTGGATCTTAGCC 4025 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||||| |||| | |||| ||| ||| ||||| || || || || || || || || Sbjct 4026 TTGACGTTCTCAATAGTGTCCGAAGCCTCGACTTCCAGGGTGATGGTCTTTCCGGTCAGG 4085 Query 152085 GTCTTCACGAAGACCTGCATT 152105 ||||||||||||| ||||||| Sbjct 4086 GTCTTCACGAAGATCTGCATT 4106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152786247853251