Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2989 181 2e-40 seq20539 168 1e-36 seq7012 147 5e-30 seq11380 138 2e-27 seq21247 116 8e-21 seq49065 109 1e-18 >seq2989 Length=17586 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| |||||||| |||| || | ||| |||||| ||||| |||||||| | | Sbjct 15729 CCTCCACGAAGGCGAAGCACCAAGTGGAGTGTGGATTCTTTCTGGATATTGTAGTCGGAA 15788 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || ||||| |||||||| ||||| || || | | || || || | ||| Sbjct 15789 AGAGTACGACCGTCCTCGAGTTGTTTGCCGGCGAATATAAGCCTCTGCTGATCTGCAGGA 15848 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| || ||||| |||||||| || |||||| | || || |||||||||||| ||||| Sbjct 15849 ATACCTTCTTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCCGAAGCTCCGACT 15908 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || ||||| ||||| || |||| ||||| ||||| ||||||||| Sbjct 15909 TCAAGGGTGATGGTCTTCCCTGTCAGCGTCTTCACGAAGATCTGCATT 15956 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 282879 CGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTG 282938 || || || || || ||||| | ||| ||||||||||||||||| || | || ||| Sbjct 15963 CGGAGTCGGAGCACAAGATGGAGAGTGGACTCTTTTTGGATGTTGTAATCCGAGAGGGTG 16022 Query 282939 CGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCC 282998 | ||||| ||||| || || | || ||||| | ||| || || || || || || Sbjct 16023 CAACCATCTTCTAGCTGCTTTCTAGCGAAGATAAGACGCTGCTGATCTGGTGGGATCCCT 16082 Query 282999 TCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGA 283058 |||||||| |||||||||||||| ||| | ||||| || ||||||||||||||||| | | Sbjct 16083 TCCTTGTCCTGGATCTTTGCTTTGACGTTCTCGATGGTATCCGAAGCTTCGACTTCCAAA 16142 Query 283059 GTGATCGTCTTACCCGTC 283076 ||||| ||||| || ||| Sbjct 16143 GTGATAGTCTTTCCAGTC 16160 >seq20539 Length=3094 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| |||||||| | ||| || || ||||| |||||||| | Sbjct 159 CCTCCACGAAGACGAAGAACCAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGAT 218 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| |||||||| || || || |||||||||||||| | || || || || Sbjct 219 AGCGTGCGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGG 278 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| || || ||| | ||||| ||||| || || ||||| Sbjct 279 ATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATTGTGTCTGACGCCTCGACC 338 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||||||||||| || || | ||||| || || ||||||||| Sbjct 339 TCTAACGTGATCGTCTTCCCAGTAAGGGTCTTCACAAAGATCTGCATT 386 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || |||||||||| || || |||||| ||||| || ||||||||||||||||| ||| Sbjct 1445 CCCGCAAAGATCAGTCGCTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCT 1504 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||||||||| ||||| || || ||||| ||||| || || || || | Sbjct 1505 TTAACATTCTCGATAGTGTCGGAAGCCTCTACCTCGAGTGTGATAGTTTTGCCAGTAAGC 1564 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| || || ||||||||| Sbjct 1565 GTCTTGACAAAAATCTGCATT 1585 Score = 116 bits (128), Expect = 8e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || || |||||||||||||| |||||| || || || ||||||||||||||||| Sbjct 1814 TTACCTGCGAAGATCAAACGTTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCTTA 1873 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || || | ||||| ||||| || || || ||||| || ||||| || ||||| || Sbjct 1874 GCCTTGACATTCTCGATTGTGTCAGATGCCTCCACTTCAAGCGTGATGGTTTTACCGGTG 1933 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | |||||||| || || |||||| Sbjct 1934 AGCGTCTTAACAAAGATTTGCATT 1957 Score = 114 bits (126), Expect = 3e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 282975 CGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATA 283034 ||||| |||||| ||||| || ||||| |||||||| || || || || | || || Sbjct 1176 CGTTGCTGGTCAGGTGGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTCTCAATG 1235 Query 283035 GTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATC 283094 ||||| ||||||||||||||||||||||||||||| || || | || || ||||| ||| Sbjct 1236 GTGTCAGAAGCTTCGACTTCGAGAGTGATCGTCTTTCCAGTGAGGGTTTTTACGAAGATC 1295 Query 283095 TGCATT 283100 |||||| Sbjct 1296 TGCATT 1301 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || || ||||| || || ||||| ||||| || ||||||||||||||||| || Sbjct 2125 CCTGCGAAAATCAATCGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCC 2184 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || || ||||| ||||| || || || || ||||||||||| || || | Sbjct 2185 TTGACATTCTCAATGGTGTCAGAAGCCTCCACCTCAAGTGTGATCGTCTTTCCAGTGAGG 2244 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||||||||| ||||||||| Sbjct 2245 GTCTTAACGAAGATCTGCATT 2265 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| |||| || || || ||| ||||| || || ||||||||||| || Sbjct 2456 TTACCAGCAAAAATCAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTG 2515 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || || | ||||| ||||| || |||||||| ||||| || |||||||| || || Sbjct 2516 GCCTTGACATTCTCGATGGTGTCAGACGCTTCGACCTCGAGGGTAATCGTCTTTCCAGTA 2575 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | || |||||||| || |||||| Sbjct 2576 AGCGTTTTAACGAAAATTTGCATT 2599 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||||| || || || || ||||| || || |||||||| ||||| Sbjct 850 TTACCAGCAAAGATCAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGAATCTTG 909 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || || | ||||| ||||| || || ||||| || ||||||||||| || || || Sbjct 910 GCCTTCACATTTTCGATTGTGTCTGACGCCTCGACCTCCAGAGTGATCGTTTTCCCAGTG 969 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | ||||| || || ||||||||| Sbjct 970 AGGGTCTTCACAAAGATCTGCATT 993 >seq7012 Length=10378 Score = 147 bits (162), Expect = 5e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||| | || || ||||||||||| || || || || || ||| Sbjct 4478 TCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCATCCTCGAGCTGCTTTCCAGCGAAG 4419 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||| || || ||| || ||||||||||||||||||||||| || | || | Sbjct 4418 ATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTAGCCTGCACATTC 4359 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| |||||||| || || || ||||| ||||| ||||| ||||| | |||||| ||| Sbjct 4358 TCGATCGTGTCCGAGGCCTCAACCTCGAGCGTGATTGTCTTCCCCGTGAGAGTCTTCACG 4299 Query 283089 AATATCTGCAT 283099 || | ||||| Sbjct 4298 AAGACTTGCAT 4288 >seq11380 Length=6731 Score = 138 bits (152), Expect = 2e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| ||||| | ||||| || || ||||| ||||| |||||||||||||||||| Sbjct 5070 CCGGCGAAGATAAGTCGTTGCTGATCTGGTGGAATTCCCTCTTTGTCTTGGATCTTTGCT 5129 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| ||||| ||||| || |||||||| ||||||||||| || ||||| Sbjct 5130 TTGACATTTTCGATTGTGTCTGAAGCCTCCACTTCGAGTGTGATCGTCTTTCCGGTCAAC 5189 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| ||||| ||||||||| Sbjct 5190 GTCTTCACGAAAATCTGCATT 5210 Score = 120 bits (132), Expect = 6e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || |||||||| || | | || || || || || || ||||||||||| |||||| Sbjct 2494 TTACCGGCAAAAATGAGCCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATCTTT 2553 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || |||||| | || || |||||||||||||||||||| || ||||| ||||| || ||| Sbjct 2554 GCCTTTACGTTCTCAATGGTGTCCGAAGCTTCGACTTCTAGGGTGATGGTCTTTCCTGTC 2613 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | ||||| ||||| ||||||||| Sbjct 2614 AGCGTCTTCACGAAGATCTGCATT 2637 Score = 116 bits (128), Expect = 8e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| || | ||| || || || || || || |||||||| ||||||||| Sbjct 2858 TTACCAGCAAATATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGGATCTTT 2917 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||| || | ||||| || ||||||||||||||||| | ||||| ||||| || ||| Sbjct 2918 GCTTTGACATTCTCGATGGTATCCGAAGCTTCGACTTCCAAGGTGATGGTCTTCCCAGTC 2977 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | ||||| ||||| ||||||||| Sbjct 2978 AGTGTCTTGACGAAGATCTGCATT 3001 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || |||||||| | || || || || || || || ||||| || |||||||| || Sbjct 3966 CCAGCAAAGATAAGGCGCTGCTGATCTGGTGGGATCCCTTCCTTATCCTGGATCTTAGCC 4025 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | || |||||||||||||| |||||||| || ||||| ||||| || |||| Sbjct 4026 TTGACGTTCTCAATAGTGTCCGAAGCCTCGACTTCCAGGGTGATGGTCTTTCCGGTCAGG 4085 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| ||||| ||||||||| Sbjct 4086 GTCTTCACGAAGATCTGCATT 4106 >seq21247 Length=2906 Score = 116 bits (128), Expect = 8e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||||||||| | || || ||||| || || ||||||||||| ||||| || Sbjct 2643 TTACCGGCAAAGATAAGGCGCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATTTTG 2584 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || ||| | ||||| ||||| || |||||||| || || ||||| ||||| || ||| Sbjct 2583 GCCTTCACGTTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTTCCAGTC 2524 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | ||||| ||||| ||||||||| Sbjct 2523 AGGGTCTTGACGAAGATCTGCATT 2500 >seq49065 Length=1973 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||| | ||| || || ||| || || ||||||||||| |||||||| || Sbjct 1702 CCAGCGAAGATGAGACGCTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCC 1761 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| |||||||| || || || ||||| ||||| ||||| ||||| | | Sbjct 1762 TTCACATTTTCGATCGTGTCCGAGGCCTCAACCTCGAGCGTGATTGTCTTCCCCGTGAGA 1821 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| || ||||| Sbjct 1822 GTCTTCACGAAGATTTGCAT 1841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045800660595574