Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq20539 129 4e-25 seq7012 107 1e-18 seq2989 107 1e-18 seq49065 98.7 7e-16 seq21247 96.9 2e-15 seq11380 93.3 3e-14 >seq20539 Length=3094 Score = 129 bits (142), Expect = 4e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||| || || ||| |||||| ||||| ||||| || | || ||| | || || Sbjct 177 ACCAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGATAGCGTGCGACCATCCTCG 236 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| |||||||||||||| | ||||||||| | ||| | |||||||| || Sbjct 237 AGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGGATTCCTTCCTTGTCTTGG 296 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | |||| | || ||||| | | || ||||| | ||| |||||||| Sbjct 297 ATCTTGGCCTTC-ACGTTCTCGATTGTGTCTGACGCCTCGACCTCTAACGTGATCGTCTT 355 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||||||||| ||||| ||||| Sbjct 356 CCCAGTAAGGGTCTTCACAAAGATCTGCAT 385 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| || |||||||||| ||||||||||| | ||| | ||||| || || ||||| Sbjct 849 CTTACCAGCAAAGATCAGTCGCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGAATCTT 908 Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 ||||| || | || ||||| | | || ||||||| || ||||| || || || Sbjct 909 GGCCTTCACATTTTCGATTGTGTCTGACGCCTCGACCTCCAGAGTGATCGTTTTCCCAGT 968 Query 44314 GAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||||| ||||| ||||| Sbjct 969 GAGGGTCTTCACAAAGATCTGCAT 992 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || || ||||| | |||||||| || | ||| | |||||||| ||| |||||| | Sbjct 551 CCTGCGAAGATTAGTCGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTCGCC 610 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || || ||| | |||||||| | || || ||||| | ||| || ||||| || ||||| Sbjct 611 TT-AACATTCTCAATGGTGTCAGAGGCCTCGACCTCAAGCGTGATAGTCTTCCCAGTGAG 669 Query 44317 GGTCTTCACGAAGATTTGCAT 44337 |||||| || ||||| ||||| Sbjct 670 GGTCTTGACAAAGATCTGCAT 690 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || || || ||||| |||||||| |||| || | |||||||| || ||||| | Sbjct 2125 CCTGCGAAAATCAATCGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCC 2184 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || | | | |||||||| | | |||||||| | || ||||||||||| |||||| Sbjct 2185 TTGACATTCTCAATGGTGTCAGAAGCCTCCACCTCAAGTGTGATCGTCTTTCCAGTGAGG 2244 Query 44318 GTCTTCACGAAGATTTGCAT 44337 ||||| |||||||| ||||| Sbjct 2245 GTCTTAACGAAGATCTGCAT 2264 >seq7012 Length=10378 Score = 107 bits (118), Expect = 1e-18 Identities = 150/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 44132 AGGTGAAGCG-TGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAG 44190 ||||| || | || |||||| || |||||||| || | || || | || || || Sbjct 4494 AGGTGGAGGGATGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCATCCTCGAG 4435 Query 44191 CTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTAT 44250 |||||| || || ||||| | |||||||||||| | || | ||| ||||| || || Sbjct 4434 CTGCTTTCCAGCGAAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGAT 4375 Query 44251 CTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCC 44310 ||| || || | | || ||||| | || || ||||| | ||| || ||||| || Sbjct 4374 CTTAGCCTGCACATTCTCGATCGTGTCCGAGGCCTCAACCTCGAGCGTGATTGTCTTCCC 4315 Query 44311 CGTGAGGGTCTTCACGAAGATTTGCATGA 44339 |||||| ||||||||||||| |||||||| Sbjct 4314 CGTGAGAGTCTTCACGAAGACTTGCATGA 4286 >seq2989 Length=17586 Score = 107 bits (118), Expect = 1e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||| |||| | ||| || || || ||| ||| ||||||||||||||||| Sbjct 15953 CATTCCTGCTCGGAGTCGGAGCACAAGATGGAGAGTGGACTCTTTTTGGATGTTGTAATC 16012 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| || | || || |||||||| | || ||||| | |||||||||||||| Sbjct 16013 CGAGAGGGTGCAACCATCTTCTAGCTGCTTTCTAGCGAAGATAAGACGCTGCTGATCTGG 16072 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| ||||| | |||| | ||||| || | | || Sbjct 16073 TGGGATCCCTTCCTTGTCCTGGATCTT-TGCTTTGACGTTCTCGATGGTATCCGAAGCTT 16131 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGT 44313 | || |||| || || |||||||| || Sbjct 16132 CGACTTCCAAAGTGATAGTCTTTCCAGT 16159 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || ||| || || ||||| ||||| |||| || || |||| || Sbjct 15746 CACCAAGTGGAGTGTGGATTCTTTCTGGATATTGTAGTCGGAAAGAGTACGACCGTCCTC 15805 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || || || ||||| || || | | ||||||||||| ||| | |||||| || ||| Sbjct 15806 GAGTTGTTTGCCGGCGAATATAAGCCTCTGCTGATCTGCAGGAATACCTTCTTTGTCCTG 15865 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| || | | |||| | |||||||| | | | | || || | || || |||| Sbjct 15866 GATCTT-GGCCTTTACGTTCTCAATGGTGTCCGAAGCTCCGACTTCAAGGGTGATGGTCT 15924 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || |||||||||||||| ||||| Sbjct 15925 TCCCTGTCAGCGTCTTCACGAAGATCTGCAT 15955 >seq49065 Length=1973 Score = 98.7 bits (108), Expect = 7e-16 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || || ||||| | |||||||||||| | || | || ||||| ||| ||||| | Sbjct 1702 CCAGCGAAGATGAGACGCTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCC 1761 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 |||| || | || ||||| | || || ||||| | ||| || ||||| |||||||| Sbjct 1762 TTCACATTTTCGATCGTGTCCGAGGCCTCAACCTCGAGCGTGATTGTCTTCCCCGTGAGA 1821 Query 44318 GTCTTCACGAAGATTTGCATGA 44339 |||||||||||||||||||||| Sbjct 1822 GTCTTCACGAAGATTTGCATGA 1843 >seq21247 Length=2906 Score = 96.9 bits (106), Expect = 2e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| ||||||||||| | |||||||| |||| || | || ||||| ||| || || Sbjct 2644 CTTACCGGCAAAGATAAGGCGCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATTTT 2585 Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 |||| | |||| | |||||||| | || ||| ||||||| || || |||||||| | Sbjct 2584 GGCCTTC-ACGTTCTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTTCCAG 2526 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||| |||||||| ||||| Sbjct 2525 TCAGGGTCTTGACGAAGATCTGCAT 2501 >seq11380 Length=6731 Score = 93.3 bits (102), Expect = 3e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| || |||||||| | ||||||||| || | || | || ||||| ||| ||||| Sbjct 4693 CTTACCAGCAAAGATAAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCCTGGATCTT 4752 Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 |||| | |||| | || || |||| | || ||||||| || || |||||||| | Sbjct 4753 G-GCTTTTACGTTCTCAATCGTATCGGAAGCCTCGACCTCCAGAGTGATGGTCTTTCCAG 4811 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||||||||||||||||||| Sbjct 4812 TCAGGGTCTTCACGAAGATTTGCAT 4836 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || |||||||| | ||||||||||||| || | |||||||| ||| ||||| || Sbjct 3966 CCAGCAAAGATAAGGCGCTGCTGATCTGGTGGGATCCCTTCCTTATCCTGGATCTT-AGC 4024 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 | | |||| | || ||||| | | || || |||| || || |||||||| || || Sbjct 4025 CTTGACGTTCTCAATAGTGTCCGAAGCCTCGACTTCCAGGGTGATGGTCTTTCCGGTCAG 4084 Query 44317 GGTCTTCACGAAGATTTGCAT 44337 ||||||||||||||| ||||| Sbjct 4085 GGTCTTCACGAAGATCTGCAT 4105 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| || ||||| || | |||||||||||||| || | |||||||| ||| ||||| Sbjct 2857 CTTACCAGCAAATATAAGACGCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGGATCTT 2916 Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 ||||| | ||| | ||||| || | | ||| || |||| || || ||||| || | Sbjct 2917 -TGCTTTGACATTCTCGATGGTATCCGAAGCTTCGACTTCCAAGGTGATGGTCTTCCCAG 2975 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| |||||||| ||||| Sbjct 2976 TCAGTGTCTTGACGAAGATCTGCAT 3000 Score = 82.4 bits (90), Expect = 5e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 44195 TTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTC 44254 || |||||||| || | | ||||||||||| || | |||||||| || ||||| Sbjct 2494 TTACCGGCAAAAATGAGCCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATCTT- 2552 Query 44255 TGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 ||| | | |||| | |||||||| | | ||| || || | || || |||||||| || Sbjct 2553 TGCCTTTACGTTCTCAATGGTGTCCGAAGCTTCGACTTCTAGGGTGATGGTCTTTCCTGT 2612 Query 44314 GAGGGTCTTCACGAAGATTTGCAT 44337 || |||||||||||||| ||||| Sbjct 2613 CAGCGTCTTCACGAAGATCTGCAT 2636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359683366550277