Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2989 154 4e-32 seq20539 134 3e-26 seq11380 134 3e-26 seq21247 127 5e-24 >seq2989 Length=17586 Score = 154 bits (170), Expect = 4e-32 Identities = 153/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || ||||| || ||||| | || || ||| || || |||||||||||||||||| | Sbjct 16159 ACTGGAAAGACTATCACTTTGGAAGTCGAAGCTTCGGATACCATCGAGAACGTCAAAGCA 16100 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| ||||| ||||| || || ||||| || ||||||||||| |||| Sbjct 16099 AAGATCCAGGACAAGGAAGGGATCCCACCAGATCAGCAGCGTCTTATCTTCGCTAGAAAG 16040 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| |||||||| | || || | ||||| ||| |||||||||| || || || ||| Sbjct 16039 CAGCTAGAAGATGGTTGCACCCTCTCGGATTACAACATCCAAAAAGAGTCCACTCTCCAT 15980 Query 178125 CTTGTTTTGAGACTCAGA 178142 ||||| | ||||| || Sbjct 15979 CTTGTGCTCCGACTCCGA 15962 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || ||||| || || |||||||| || || | | || ||| Sbjct 15952 CAGATCTTCGTGAAGACGCTGACAGGGAAGACCATCACCCTTGAAGTCGGAGCTTCGGAC 15893 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| |||||||||||||| || ||| | || ||||| Sbjct 15892 ACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTGCAGATCAGCAG 15833 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | ||||| |||||||| ||||| ||||| || || | |||||| |||| || || || Sbjct 15832 AGGCTTATATTCGCCGGCAAACAACTCGAGGACGGTCGTACTCTTTCCGACTACAATATC 15773 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || |||||||| ||||| || |||| Sbjct 15772 CAGAAAGAATCCACACTCCA-CTTG 15749 >seq20539 Length=3094 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || |||||||| | ||||| || |||||| Sbjct 382 CAGATCTTTGTGAAGACCCTTACTGGGAAGACGATCACGTTAGAGGTCGAGGCGTCAGAC 323 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| || ||||| |||||||||||||| || ||||| Sbjct 322 ACAATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGATCAGCAG 263 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| |||||||| |||||||| ||||| | || || | || || || || Sbjct 262 AGATTGATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGCACGCTATCAGACTACAATATC 203 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || ||||| ||| Sbjct 202 CAGAAGGAGTCCACTCTCCATCTGGTT 176 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || ||||| ||||| ||||||||||| ||| || ||| Sbjct 2595 CAAATTTTCGTTAAAACGCTTACTGGAAAGACGATTACCCTCGAGGTCGAAGCGTCTGAC 2536 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| || || || |||||||||||||| ||||| || ||||| Sbjct 2535 ACCATCGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGAATTCCTCCTGATCAGCAG 2476 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || || || || || || || Sbjct 2475 CGCCTGATTTTTGCTGGTAA 2456 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || ||||| || ||||| || ||| ||| Sbjct 687 CAGATCTTTGTCAAGACCCTCACTGGGAAGACTATCACGCTTGAGGTCGAGGCCTCTGAC 628 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| |||||||| |||||||||||||| |||||||| Sbjct 627 ACCATTGAGAATGTTAAGGCGAAGATCCAGGACAAGGAAGGAATCCCTCCCGACCAGCAG 568 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| |||||||| || Sbjct 567 CGACTAATCTTCGCAGG 551 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || ||||| || ||||||||||| || ||||| || |||||| Sbjct 989 CAGATCTTTGTGAAGACCCTCACTGGGAAAACGATCACTCTGGAGGTCGAGGCGTCAGAC 930 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || |||||||| ||||||||||| || |||||||| ||||| Sbjct 929 ACAATCGAAAATGTGAAGGCCAAGATTCAAGACAAAGAAGGCATTCCTCCGGATCAGCAG 870 Query 178044 CGACTTATCTTCGCCGGAAA 178063 ||||| ||||| || || || Sbjct 869 CGACTGATCTTTGCTGGTAA 850 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||| ||||| |||||||| ||||| || ||| || ||| Sbjct 1297 CAGATCTTCGTAAAAACCCTCACTGGAAAGACGATCACTCTCGAAGTCGAAGCTTCTGAC 1238 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| || || || || || |||||||| || || ||||||||| Sbjct 1237 ACCATTGAGAATGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCACCTGACCAGCAA 1178 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| || ||||| || Sbjct 1177 CGACTAATTTTCGCAGG 1161 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| || ||||| ||||| || || ||||| || ||| Sbjct 1953 CAAATCTTTGTTAAGACGCTCACCGGTAAAACCATCACGCTTGAAGTGGAGGCATCTGAC 1894 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| ||||| ||||| || ||||| ||||||||||| || ||||||||| Sbjct 1893 ACAATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCTGACCAGCAA 1834 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | |||||||| || || Sbjct 1833 CGTTTGATCTTCGCAGGTAA 1814 >seq11380 Length=6731 Score = 134 bits (148), Expect = 3e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || | || ||||| |||||||| ||||| ||||| |||||| Sbjct 5206 CAGATTTTCGTGAAGACGTTGACCGGAAAGACGATCACACTCGAAGTGGAGGCTTCAGAC 5147 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| |||||| || |||||||| ||||| || || || |||||| Sbjct 5146 ACAATCGAAAATGTCAAAGCAAAGATCCAAGACAAAGAGGGAATTCCACCAGATCAGCAA 5087 Query 178044 CGACTTATCTTCGCCGG 178060 ||||||||||||||||| Sbjct 5086 CGACTTATCTTCGCCGG 5070 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || ||||| || |||||||| ||||| ||| ||||||| Sbjct 5542 CAGATCTTCGTCAAGACCCTGACTGGAAAGACAATCACCCTGGAGGTCGAAGCCTCAGAC 5483 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || || || |||||||| ||||| ||||| || |||||||| Sbjct 5482 ACCATCGAGAACGTAAAGGCCAAAATCCAGGACAAGGAAGGGATCCCACCAGACCAGCAG 5423 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || ||||| || ||||| || Sbjct 5422 CGCCTTATTTTTGCCGGTAA 5403 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || || ||||||||||||||||| ||||||||| ||| || Sbjct 5907 CAGATCTTCGTGAAAACACTTACTGGAAAAACGATCACCCTTGAGGTGGAAGCCTCGGAT 5848 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || ||||| |||||||| |||||||| || || |||||| Sbjct 5847 ACAATTGAAAATGTAAAGGCGAAAATTCAAGACAAAGAGGGAATCCCACCCGATCAGCAA 5788 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||||||| || || || || Sbjct 5787 CGACTTATTTTTGCTGGTAA 5768 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| || |||||||| || |||||||| || || || || || Sbjct 3738 CAAATCTTCGTGAAAACCCTGACAGGAAAGACCATCACCCTGGAAGTCGAGGCTTCGGAT 3679 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| || || ||||||||||| |||||||| || || ||||| Sbjct 3678 ACCATCGAGAACGTCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCACCAGATCAGCAG 3619 Query 178044 CGACTTATCTTCGCCGG 178060 || || || || ||||| Sbjct 3618 CGTCTCATTTTTGCCGG 3602 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||||||||| || ||||| || |||||||| || || || ||||| Sbjct 4468 CAGATCTTCGTGAAAACTCTGACTGGAAAGACCATCACCCTGGAAGTCGAGGCTTCAGAT 4409 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| ||||| || ||||| ||||| || || ||||| Sbjct 4408 ACTATCGAGAACGTCAAGGCTAAGATCCAGGATAAGGAAGGGATCCCACCAGATCAGCAG 4349 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || |||||||| || || || Sbjct 4348 CGTCTTATCTTTGCTGGTAA 4329 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || | || ||||| || |||||||| || || || || || Sbjct 2266 CAGATTTTCGTGAAGACCTTGACCGGAAAGACCATCACCCTTGAAGTCGAGGCTTCTGAT 2207 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| |||||||| ||||| || ||||| |||||||| Sbjct 2206 ACCATCGAAAACGTGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCCGACCAGCAG 2147 Query 178044 CGACTTATCTTCGCCGGAAA 178063 | |||||||||||||| || Sbjct 2146 AGGCTTATCTTCGCCGGTAA 2127 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || |||||| | || || ||| || || Sbjct 2997 CAGATCTTCGTCAAGACACTGACTGGGAAGACCATCACCTTGGAAGTCGAAGCTTCGGAT 2938 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| |||||| |||||| |||||||| ||||| ||||| || || ||||| Sbjct 2937 ACCATCGAGAATGTCAAAGCAAAGATCCAGGACAAGGAAGGGATCCCACCAGATCAGCAG 2878 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || ||||| || || || || Sbjct 2877 CGTCTTATATTTGCTGGTAA 2858 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || ||||| || |||||||| || || || || ||| Sbjct 4102 CAGATCTTCGTGAAGACCCTGACCGGAAAGACCATCACCCTGGAAGTCGAGGCTTCGGAC 4043 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||||||||| ||||| ||||| || ||||| ||||| || || ||||| Sbjct 4042 ACTATTGAGAACGTCAAGGCTAAGATCCAGGATAAGGAAGGGATCCCACCAGATCAGCAG 3983 Query 178044 CGACTTATCTTCGCCGG 178060 || |||||||| || || Sbjct 3982 CGCCTTATCTTTGCTGG 3966 Score = 95.1 bits (104), Expect = 3e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||||||| | || ||||||| || ||| |||| || || || || || || |||| Sbjct 3316 TCGTGAAAGCCCTGTCAGGAAAGACCATCGCCCTGGAAGTCGAGGCTTCGGATACTATCG 3257 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 ||||||| || ||||| ||||||||||| |||||||| || |||||||| || || | Sbjct 3256 AGAACGTTAAGGCTAAGATCCAGGACAAAGAGGGAATCCCACCCGACCAGCAGCGTCTCA 3197 Query 178051 TCTTCGCCGG 178060 | || ||||| Sbjct 3196 TTTTTGCCGG 3187 >seq21247 Length=2906 Score = 127 bits (140), Expect = 5e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || || ||||||||||||||||| ||||||||| ||| || Sbjct 2149 CAGATCTTCGTGAAAACACTTACTGGAAAAACGATCACCCTTGAGGTGGAAGCCTCGGAT 2208 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || ||||| |||||||| |||||||| || || |||||| Sbjct 2209 ACGATTGAAAATGTAAAGGCGAAAATTCAAGACAAAGAGGGAATCCCACCCGATCAGCAA 2268 Query 178044 CGACTTATCTTCGCCGGAAA 178063 ||||||||||| || || || Sbjct 2269 CGACTTATCTTTGCTGGTAA 2288 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || ||||| || |||||||| ||||| ||| ||||||| Sbjct 2504 CAGATCTTCGTCAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTCGAAGCCTCAGAC 2563 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || || || |||||||| || || ||||| || |||||||| Sbjct 2564 ACCATCGAGAACGTGAAGGCCAAAATCCAGGACAAGGAGGGGATCCCACCAGACCAGCAG 2623 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || |||||||| ||||| || Sbjct 2624 CGCCTTATCTTTGCCGGTAA 2643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202651896613314