Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq20539 104 2e-17 seq2989 93.3 4e-14 seq7012 87.8 2e-12 >seq20539 Length=3094 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||||| || ||| ||||||||| || || ||||| || Sbjct 159 CCTCCACGAAGACGAAGAACCAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGAT 218 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || ||||||||||| ||||| || |||| | ||| || || | || Sbjct 219 AGCGTGCGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGATCGGGAGGG 278 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||| ||| || ||||| | | ||||| || ||| ||| Sbjct 279 ATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATTGTGTCTGACGCCTCGACC 338 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| ||||| || || || || ||||| || || |||||||| Sbjct 339 TCTAACGTGATCGTCTTCCCAGTAAGGGTCTTCACAAAGATCTGCAT 385 >seq2989 Length=17586 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||||| || || ||| || ||||| || || |||||||| Sbjct 15728 GCCTCCACGAAGGCGAAGCACCAAGTGGAGTGTGGATTCTTTCTGGATATTGTAGTCGGA 15787 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| ||||| || |||||||||||||| || | ||| || || || || Sbjct 15788 AAGAGTACGACCGTCCTCGAGTTGTTTGCCGGCGAATATAAGCCTCTGCTGATCTGCAGG 15847 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA--CTCC 41812 || | || |||||| || | || || | ||| | || || | ||| |||| Sbjct 15848 AATACCTTCTTTGTCC-TGGATCTTGGCCTTTACG--TTCTCAATGGTGTCCGAAGCTCC 15904 Query 41813 -ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || || || || || ||||||||||| ||||| |||||||| Sbjct 15905 GACTTCAAGGGTGATGGTCTTCCCTGTCAGCGTCTTCACGAAGATCTGCAT 15955 >seq7012 Length=10378 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||| ||||| || || || || | || ||||||||||| || ||||| Sbjct 4479 CTCCTTCTGAATGTTGTAGTCCGACAGAGTACGGCCATCCTCGAGCTGCTTTCCAGCGAA 4420 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || ||||| || || | || | | ||||||||| ||| || || || Sbjct 4419 GATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGGATCTTAGCCTGCACATT 4360 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | ||||| | ||| ||||| | ||| || || || ||||| || ||||| || Sbjct 4359 CTCGATCGTGTCCGAGGCCTCAACCTCGAGCGTGATTGTCTTCCCCGTGAGAGTCTTCAC 4300 Query 41851 GAAAATCTGCATG 41863 ||| | |||||| Sbjct 4299 GAAGACTTGCATG 4287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461899593797200