Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq616 127 2e-24 seq4978 82.4 9e-11 >seq616 Length=79441 Score = 127 bits (140), Expect = 2e-24 Identities = 292/440 (66%), Gaps = 0/440 (0%) Strand=Plus/Minus Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 |||||| | |||||| || || | || || | | |||| || ||||| || || || Sbjct 56672 AATATCTGCATGCCATGGCTCGAGATAGATTGCAAAGGCTCCTGGTCGTTTATTGCCGCC 56613 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 ||||| | ||||| ||| || || || || || | |||||||||| | |||||||| Sbjct 56612 TTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCATTGGA 56553 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 54309 || || || || || || | ||| |||| ||||| ||| | | ||| Sbjct 56552 TGTGCCGTTAGTGCCACTAATCAATGAACCAGTGGCCCGAATTTTATGCACGTTCAAACC 56493 Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 54369 || || || || | || || |||| || ||| | || | ||||| || || ||| | Sbjct 56492 GATTCCTCCAGCGCTCTTCGATATTAGAGCACATTGCTTCAGTGTATCGTAAATACCCGC 56433 Query 54370 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 54429 || ||| || |||| | | |||||||| || | ||| | | ||||| Sbjct 56432 AATCGAATCCTCACTCATCGTCAACAGAAAACACGATGAAAGTTGCGGCCATAGCGTTCC 56373 Query 54430 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 54489 |||||||| | || || || || || || || | |||| | |||||||||||| Sbjct 56372 AGCATTAAACATTGTTGGTGATGCATGAGTGAAATACCGTTCACTCATTAGATTGTACGT 56313 Query 54490 CTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 54549 |||||||||| || |||||| |||||| || || || || ||||| | |||||| Sbjct 56312 TTCGATAGCTGCATCGATATCCTCACCATGAATACCGACCGCTACCCGCATAAGCATGTG 56253 Query 54550 CTGAGGTCTTTCAACGATCT 54569 || ||||||||| ||| || Sbjct 56252 TTGTGGTCTTTCAGCGACCT 56233 >seq4978 Length=11967 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 24485 |||||||||||||| || ||||| | ||| |||||||| ||||||||| ||| ||| || Sbjct 7811 TACATTTCCGAATGGATATTTTCCACGGCGATTTGAAAGCCGTAGAAAAATCGAGCTTCT 7870 Query 24486 GTAATCTGTACTTCTATACAAAATCGTTCT 24515 | || || |||||| | | ||||||||| Sbjct 7871 GGAACTTGGACTTCTTTCGAGAATCGTTCT 7900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593583299974800