Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014-
09-24] 18,635 sequences; 253,242,791 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq616 127 2e-24
seq4978 82.4 9e-11
>seq616
Length=79441
Score = 127 bits (140), Expect = 2e-24
Identities = 292/440 (66%), Gaps = 0/440 (0%)
Strand=Plus/Minus
Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189
|||||| | |||||| || || | || || | | |||| || ||||| || || ||
Sbjct 56672 AATATCTGCATGCCATGGCTCGAGATAGATTGCAAAGGCTCCTGGTCGTTTATTGCCGCC 56613
Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249
||||| | ||||| ||| || || || || || | |||||||||| | ||||||||
Sbjct 56612 TTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCATTGGA 56553
Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 54309
|| || || || || || | ||| |||| ||||| ||| | | |||
Sbjct 56552 TGTGCCGTTAGTGCCACTAATCAATGAACCAGTGGCCCGAATTTTATGCACGTTCAAACC 56493
Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 54369
|| || || || | || || |||| || ||| | || | ||||| || || ||| |
Sbjct 56492 GATTCCTCCAGCGCTCTTCGATATTAGAGCACATTGCTTCAGTGTATCGTAAATACCCGC 56433
Query 54370 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 54429
|| ||| || |||| | | |||||||| || | ||| | | |||||
Sbjct 56432 AATCGAATCCTCACTCATCGTCAACAGAAAACACGATGAAAGTTGCGGCCATAGCGTTCC 56373
Query 54430 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 54489
|||||||| | || || || || || || || | |||| | ||||||||||||
Sbjct 56372 AGCATTAAACATTGTTGGTGATGCATGAGTGAAATACCGTTCACTCATTAGATTGTACGT 56313
Query 54490 CTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 54549
|||||||||| || |||||| |||||| || || || || ||||| | ||||||
Sbjct 56312 TTCGATAGCTGCATCGATATCCTCACCATGAATACCGACCGCTACCCGCATAAGCATGTG 56253
Query 54550 CTGAGGTCTTTCAACGATCT 54569
|| ||||||||| ||| ||
Sbjct 56252 TTGTGGTCTTTCAGCGACCT 56233
>seq4978
Length=11967
Score = 82.4 bits (90), Expect = 9e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 24485
|||||||||||||| || ||||| | ||| |||||||| ||||||||| ||| ||| ||
Sbjct 7811 TACATTTCCGAATGGATATTTTCCACGGCGATTTGAAAGCCGTAGAAAAATCGAGCTTCT 7870
Query 24486 GTAATCTGTACTTCTATACAAAATCGTTCT 24515
| || || |||||| | | |||||||||
Sbjct 7871 GGAACTTGGACTTCTTTCGAGAATCGTTCT 7900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593583299974800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |