Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7835 91.5 2e-13 seq1455 91.5 2e-13 >seq7835 Length=5652 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || ||||| ||||| || ||||||||| |||| ||||| || | Sbjct 4355 ATGCAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 4296 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | || | ||||||| ||||||||||| || || | || || Sbjct 4295 GACACGATAGAGAACG-TGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCA 4237 Query 40809 GCAACGACTCATCT 40822 ||||||||| |||| Sbjct 4236 GCAACGACTGATCT 4223 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || ||||| ||||| || ||||||||| |||| ||||| || | Sbjct 4663 ATGCAGATATTCGTCAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 4604 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | || | ||||||| ||||||||||| || || | || || Sbjct 4603 GACACGATAGAGAACG-TGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCA 4545 Query 40809 GCAACGACTCATCT 40822 ||||||||| |||| Sbjct 4544 GCAACGACTGATCT 4531 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || ||||| ||||| || ||||||||| |||| ||||| || | Sbjct 4971 ATGCAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 4912 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | || | ||||||| ||||||||||| || || | || || Sbjct 4911 GACACGATAGAGAACG-TGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCA 4853 Query 40809 GCAACGACTCATCT 40822 ||||||||| |||| Sbjct 4852 GCAACGACTGATCT 4839 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || ||||| ||||| || ||||||||| |||| ||||| || | Sbjct 5279 ATGCAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 5220 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | || | ||||||| ||||||||||| || || | || || Sbjct 5219 GACACGATAGAGAACG-TGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCA 5161 Query 40809 GCAACGACTCATCT 40822 ||||||||| |||| Sbjct 5160 GCAACGACTGATCT 5147 Score = 82.4 bits (90), Expect = 8e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 40697 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG 40756 ||||||| || ||||| ||||| || ||||||||| |||| ||||| || | |||| Sbjct 5580 TATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCTGACACGA 5521 Query 40757 TGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815 | | |||| | || | ||||||| ||||||||||| || || | || ||||||||| Sbjct 5520 TAGAGAACG-TGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCAGCAACGA 5462 Query 40816 CTCATCT 40822 || |||| Sbjct 5461 CTGATCT 5455 >seq1455 Length=44427 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || ||||| ||||| || ||||||||| |||| ||||| || | Sbjct 232 ATGCAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 173 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | || | ||||||| ||||||||||| || || | || || Sbjct 172 GACACGATAGAGAACG-TGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCA 114 Query 40809 GCAACGACTCATCT 40822 ||||||||| |||| Sbjct 113 GCAACGACTGATCT 100 Score = 82.4 bits (90), Expect = 8e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || || || ||||||||| |||| ||||| || | Sbjct 540 ATGCAGATTTTCGTGAAAACTCTTACTGGTAAGACCATCACCCTCGAGGTCGAGGCATCT 481 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | || | ||||||| ||||||||||| || || | || || Sbjct 480 GACACGATAGAGAACG-TGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCA 422 Query 40809 GCAACGACTCATCT 40822 ||||||||| |||| Sbjct 421 GCAACGACTGATCT 408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515099186127600