Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq2276 89.7 8e-13 >seq2276 Length=29858 Score = 89.7 bits (98), Expect = 8e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || || || || || || ||| | || | ||||| Sbjct 6412 AATGCAAATCTTTGTGAAAACTCTGACTGGGAAGACCATTACTCTCGAAGTGGAAGCCTC 6471 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| |||| || ||||| ||||||||||| || ||||| ||||| Sbjct 6472 GGATACAATTGAGAATGTAAAGGCAAAGATTCAGGATAAAGAAGGAATCCCACCAGATCA 6531 Query 124658 ACAAAGGCTTATTTTTGCAGGAAA 124681 ||| ||| | ||||| ||||| || Sbjct 6532 ACAGAGGTTGATTTTCGCAGGTAA 6555 Score = 89.7 bits (98), Expect = 8e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || || || || || || ||| | || | ||||| Sbjct 7017 AATGCAAATCTTTGTGAAAACTCTGACTGGGAAGACCATTACTCTCGAAGTGGAAGCCTC 7076 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| |||| || ||||| ||||||||||| || ||||| ||||| Sbjct 7077 GGATACAATTGAGAATGTAAAGGCAAAGATTCAGGATAAAGAAGGAATCCCACCAGATCA 7136 Query 124658 ACAAAGGCTTATTTTTGCAGGAAA 124681 ||| ||| | ||||| ||||| || Sbjct 7137 ACAGAGGTTGATTTTCGCAGGTAA 7160 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || || || ||||| || || | ||| | ||||| Sbjct 7318 AATGCAAATCTTTGTGAAAACGCTTACTGGTAAAACGATCACACTCGAGGTGGAAGCGTC 7377 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | || ||| || || ||||| || || || ||||||||||| Sbjct 7378 CGATACTATTGAAAATGTGAAGGCGAAGATCCAGGATAAGGAGGGAATCCCACCTGATCA 7437 Query 124658 ACAAAGGCTTATTTTTGCAGGAAA 124681 || ||||||||||| ||||| || Sbjct 7438 GCAGAGGCTTATTTTCGCAGGTAA 7461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755280025968000