Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2226 105 6e-18 seq1455 95.1 1e-14 seq7835 82.4 7e-11 >seq2226 Length=30398 Score = 105 bits (116), Expect = 6e-18 Identities = 114/146 (78%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTTTTG 118657 |||||| |||| ||||| ||||||||||||||||| ||||| |||| |||| || || Sbjct 22486 CCAGCGAAGATTAGACGTTGCTGATCGGGAGGTATACCCTCTTTGTCCTGT-ATCTTCGC 22428 Query 118658 TTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCA 118716 |||||| | ||||| ||| |||| ||| ||| ||||| | || | || || || || | Sbjct 22427 TTTAACATTTTCGATGGTATCCGATGC-CTCAACCTCAAGAGTGATGGTCTTTCCAGTAA 22369 Query 118717 GAGTTTTTACAAAAATCTGCATGGCT 118742 |||| || |||||||| |||||| || Sbjct 22368 GAGTCTTCACAAAAATTTGCATGTCT 22343 >seq1455 Length=44427 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 ||||| |||| || || |||||||| ||||| || ||||| |||||| |||||| | Sbjct 401 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 460 Query 118659 TTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 || || | || | ||||| | ||| ||||||||||| ||| | || || || || || Sbjct 461 TTCACGTTCTCTATCGTGTCAGATGC-CTCGACCTCGAGGGTGATGGTCTTACCAGTAAG 519 Query 118718 AGTTTTTACAAAAATCTGCATGGC 118741 |||||| || ||||||||||| || Sbjct 520 AGTTTTCACGAAAATCTGCATAGC 543 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 ||||| |||| || || |||||||| ||||| || ||||| |||||| |||||| | Sbjct 93 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 152 Query 118659 TTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 || || | || | ||||| | ||| ||||||||||| ||| | || || || || || Sbjct 153 TTCACGTTCTCTATCGTGTCAGATGC-CTCGACCTCGAGGGTGATGGTCTTTCCCGTAAG 211 Query 118718 AGTTTTTACAAAAATCTGCATG 118739 || || || || ||||||||| Sbjct 212 CGTCTTCACGAATATCTGCATG 233 >seq7835 Length=5652 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 ||||| |||| || || |||||||| ||||| || ||||| |||||| |||||| | Sbjct 4216 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 4275 Query 118659 TTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 || || | || | ||||| | ||| ||||||||||| ||| | || || || || || Sbjct 4276 TTCACGTTCTCTATCGTGTCAGATGC-CTCGACCTCGAGGGTGATGGTCTTTCCCGTAAG 4334 Query 118718 AGTTTTTACAAAAATCTGCATG 118739 || || || || ||||||||| Sbjct 4335 CGTCTTCACGAATATCTGCATG 4356 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 ||||| |||| || || |||||||| ||||| || ||||| |||||| |||||| | Sbjct 4524 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 4583 Query 118659 TTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 || || | || | ||||| | ||| ||||||||||| ||| | || || || || || Sbjct 4584 TTCACGTTCTCTATCGTGTCAGATGC-CTCGACCTCGAGGGTGATGGTCTTTCCCGTAAG 4642 Query 118718 AGTTTTTACAAAAATCTGCATG 118739 || || || || ||||||||| Sbjct 4643 CGTCTTGACGAATATCTGCATG 4664 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 ||||| |||| || || |||||||| ||||| || ||||| |||||| |||||| | Sbjct 4832 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 4891 Query 118659 TTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 || || | || | ||||| | ||| ||||||||||| ||| | || || || || || Sbjct 4892 TTCACGTTCTCTATCGTGTCAGATGC-CTCGACCTCGAGGGTGATGGTCTTTCCCGTAAG 4950 Query 118718 AGTTTTTACAAAAATCTGCATG 118739 || || || || ||||||||| Sbjct 4951 CGTCTTCACGAATATCTGCATG 4972 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 ||||| |||| || || |||||||| ||||| || ||||| |||||| |||||| | Sbjct 5140 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 5199 Query 118659 TTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 || || | || | ||||| | ||| ||||||||||| ||| | || || || || || Sbjct 5200 TTCACGTTCTCTATCGTGTCAGATGC-CTCGACCTCGAGGGTGATGGTCTTTCCCGTAAG 5258 Query 118718 AGTTTTTACAAAAATCTGCATG 118739 || || || || ||||||||| Sbjct 5259 CGTCTTCACGAATATCTGCATG 5280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433731871015420