Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq616 174 1e-38 seq2226 89.7 5e-13 >seq616 Length=79441 Score = 174 bits (192), Expect = 1e-38 Identities = 301/431 (70%), Gaps = 6/431 (1%) Strand=Plus/Minus Query 23450 TCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGA 23509 || |||||||| |||||||| || | ||||| || || |||| ||||||||||| ||| Sbjct 56668 TCTGCATGCCATGGCTCGAGATAGATTGCAAAGGCTCCTGGTCGTTTATTGCCGCCTTGA 56609 Query 23510 TCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCG 23569 || ||||| || || || |||||||| || | || ||| || || | || ||||| | | Sbjct 56608 TCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCATTGGATGTG 56549 Query 23570 CCGCCTACGCCCGCCA--CACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTA 23627 ||| || || | | || | ||||| | || |||| || || |||| ||||| | Sbjct 56548 CCG-TTAGTGCCACTAATCAAT-GAACCAGTGGCCCGAATTTTATGCACGTTCAAACCGA 56491 Query 23628 TGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGA 23687 | ||||| | |||||||| | || ||||| ||||| || ||||| || ||| | | Sbjct 56490 TTCCTCCAGCGCTCTTCGATATTAGAGCACATTGCTTCAGTGTATCGTAAATACCCGCAA 56431 Query 23688 TGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGG 23747 | ||||| | ||| | || |||||||| || | ||||| |||| | | Sbjct 56430 TCGAATCCTCACTCATCGTCAACAGAAAACACGATGAAAGTTGCGGCCATAGCGTTCCAG 56371 Query 23748 CCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTC-GACATTAGATTGTACGTG 23806 | |||| ||| || || || || || || || ||| ||||||||||||||| Sbjct 56370 CATTAAACATTGTTGGTGATGCATGAGTGAAATA-CCGTTCACTCATTAGATTGTACGTT 56312 Query 23807 TCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTAT 23866 ||||| || ||||| || ||||| || || ||||||| || || ||||| | ||||| | Sbjct 56311 TCGATAGCTGCATCGATATCCTCACCATGAATACCGACCGCTACCCGCATAAGCATGTGT 56252 Query 23867 TGAGGTCTCTC 23877 || ||||| || Sbjct 56251 TGTGGTCTTTC 56241 >seq2226 Length=30398 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 31191 ACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGT 31250 ||||||||||||| || |||||||| || || || || ||||| | || ||||| | | Sbjct 22345 ACATGCAAATTTTTGTGAAGACTCTTACTGGAAAGACCATCACTCTTGAGGTTGAGGCAT 22404 Query 31251 CCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 | || | |||||| || ||| || ||| |||||| || || | || ||||| | Sbjct 22405 CGGATACCATCGAAAATGTTAAAGCGAAGATACAGGACAAAGAGGGTATACCTCCCGATC 22464 Query 31311 AGCAGCGTCTAATATTCGCTGG 31332 |||| |||||||| |||||||| Sbjct 22465 AGCAACGTCTAATCTTCGCTGG 22486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445662564289200