Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq616 140 3e-28 >seq616 Length=79441 Score = 140 bits (154), Expect = 3e-28 Identities = 293/437 (67%), Gaps = 0/437 (0%) Strand=Plus/Minus Query 38113 TCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCA 38172 ||||| ||||| || |||||||| || | ||| || | | |||||||||| ||||| Sbjct 56677 TCGAAAATATCTGCATGCCATGGCTCGAGATAGATTGCAAAGGCTCCTGGTCGTTTATTG 56618 Query 38173 CCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCA 38232 || || |||| || |||| | | || || || |||| | |||||| || || | ||| Sbjct 56617 CCGCCTTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCA 56558 Query 38233 TTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGAC 38292 || ||| ||||||| | || || | | ||| | || || || ||| | | Sbjct 56557 TTGGATGTGCCGTTAGTGCCACTAATCAATGAACCAGTGGCCCGAATTTTATGCACGTTC 56498 Query 38293 AATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATA 38352 || || ||||| || || || ||||||| ||| ||||| || | ||||| | ||| Sbjct 56497 AAACCGATTCCTCCAGCGCTCTTCGATATTAGAGCACATTGCTTCAGTGTATCGTAAATA 56438 Query 38353 CCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGA 38412 || | || || || | || | | | |||||| || | ||| ||| || | Sbjct 56437 CCCGCAATCGAATCCTCACTCATCGTCAACAGAAAACACGATGAAAGTTGCGGCCATAGC 56378 Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 ||||| || ||||| | ||| || |||||||| |||| | ||| || ||| Sbjct 56377 GTTCCAGCATTAAACATTGTTGGTGATGCATGAGTGAAATACCGTTCACTCATTAGATTG 56318 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 || ||||| || | |||| ||||| | || |||||||| | | ||||| ||| ||| Sbjct 56317 TACGTTTCGATAGCTGCATCGATATCCTCACCATGAATACCGACCGCTACCCGCATAAGC 56258 Query 38533 ATATGTTGTGGTCTTTC 38549 || |||||||||||||| Sbjct 56257 ATGTGTTGTGGTCTTTC 56241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468415663004400