Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq616 127 3e-24 >seq616 Length=79441 Score = 127 bits (140), Expect = 3e-24 Identities = 292/440 (66%), Gaps = 0/440 (0%) Strand=Plus/Minus Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 |||||| |||||| || || | || || || | |||| || ||||| || || || Sbjct 56672 AATATCTGCATGCCATGGCTCGAGATAGATTGCAAAGGCTCCTGGTCGTTTATTGCCGCC 56613 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 ||||| | ||||| ||| || || || || || | |||||||||| | |||||||| Sbjct 56612 TTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCATTGGA 56553 Query 66281 TGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACC 66340 ||| || || || || || | ||| | || ||||| ||| | | ||| Sbjct 56552 TGTGCCGTTAGTGCCACTAATCAATGAACCAGTGGCCCGAATTTTATGCACGTTCAAACC 56493 Query 66341 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 66400 ||||| || || | || || |||| || ||| | || | ||||| || || ||| | Sbjct 56492 GATTCCTCCAGCGCTCTTCGATATTAGAGCACATTGCTTCAGTGTATCGTAAATACCCGC 56433 Query 66401 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 66460 || ||| || |||| | | |||||||| || | ||| | | ||||| Sbjct 56432 AATCGAATCCTCACTCATCGTCAACAGAAAACACGATGAAAGTTGCGGCCATAGCGTTCC 56373 Query 66461 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 66520 |||||||| | || || || || || || || | |||| | |||||||||||| Sbjct 56372 AGCATTAAACATTGTTGGTGATGCATGAGTGAAATACCGTTCACTCATTAGATTGTACGT 56313 Query 66521 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 66580 || ||||||| || |||||| |||||| || || || || ||||| | |||||| Sbjct 56312 TTCGATAGCTGCATCGATATCCTCACCATGAATACCGACCGCTACCCGCATAAGCATGTG 56253 Query 66581 CTGAGGTCTTTCAACGATCT 66600 || ||||||||| ||| || Sbjct 56252 TTGTGGTCTTTCAGCGACCT 56233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658019486873400