Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq7835 89.7 5e-13 seq1455 87.8 2e-12 >seq7835 Length=5652 Score = 89.7 bits (98), Expect = 5e-13 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 |||||||| ||||||| ||||||||||| ||||| || || |||||||| ||| |||| Sbjct 4214 TACCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTC-TTGAATTTTG 4272 Query 139683 G-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 | ||| | | || | ||||| | | ||| ||||| | ||| | ||||| || || Sbjct 4273 GCTTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTA 4332 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||| || |||||||| ||||| Sbjct 4333 AGCGTCTTCACGAATATCTGCAT 4355 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 139624 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG 139683 ||||||| ||||||| ||||||||||| ||||| || || |||||||| ||| |||| | Sbjct 4523 ACCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTC-TTGAATTTTGG 4581 Query 139684 -TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 ||| | | || | ||||| | | ||| ||||| | ||| | ||||| || || | Sbjct 4582 CTTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAA 4641 Query 139743 ACGTTTTTACGAATATTTGCAT 139764 ||| || |||||||| ||||| Sbjct 4642 GCGTCTTGACGAATATCTGCAT 4663 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 139624 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG 139683 ||||||| ||||||| ||||||||||| ||||| || || |||||||| ||| |||| | Sbjct 4831 ACCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTC-TTGAATTTTGG 4889 Query 139684 -TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 ||| | | || | ||||| | | ||| ||||| | ||| | ||||| || || | Sbjct 4890 CTTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAA 4949 Query 139743 ACGTTTTTACGAATATTTGCAT 139764 ||| || |||||||| ||||| Sbjct 4950 GCGTCTTCACGAATATCTGCAT 4971 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 139624 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG 139683 ||||||| ||||||| ||||||||||| ||||| || || |||||||| ||| |||| | Sbjct 5139 ACCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTC-TTGAATTTTGG 5197 Query 139684 -TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 ||| | | || | ||||| | | ||| ||||| | ||| | ||||| || || | Sbjct 5198 CTTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAA 5257 Query 139743 ACGTTTTTACGAATATTTGCAT 139764 ||| || |||||||| ||||| Sbjct 5258 GCGTCTTCACGAATATCTGCAT 5279 >seq1455 Length=44427 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 139624 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG 139683 ||||||| ||||||| ||||||||||| ||||| || || |||||||| ||| |||| | Sbjct 92 ACCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTC-TTGAATTTTGG 150 Query 139684 -TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 ||| | | || | ||||| | | ||| ||||| | ||| | ||||| || || | Sbjct 151 CTTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAA 210 Query 139743 ACGTTTTTACGAATATTTGCAT 139764 ||| || |||||||| ||||| Sbjct 211 GCGTCTTCACGAATATCTGCAT 232 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 139624 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG 139683 ||||||| ||||||| ||||||||||| ||||| || || |||||||| ||| |||| | Sbjct 400 ACCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTC-TTGAATTTTGG 458 Query 139684 -TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 ||| | | || | ||||| | | ||| ||||| | ||| | ||||| || || | Sbjct 459 CTTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTACCAGTAA 518 Query 139743 ACGTTTTTACGAATATTTGCATAGC 139767 ||||| ||||| || |||||||| Sbjct 519 GAGTTTTCACGAAAATCTGCATAGC 543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495948448092000